Variant report

Variant	nsv9268
Chromosome Location	chr15:55233628-55243925
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 537 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:537 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28592965	chr15:55233635-55233636	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs544500123	chr15:55233737-55233738	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs137889543	chr15:55233797-55233798	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs191863045	chr15:55233822-55233823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs540747426	chr15:55233832-55233833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560403195	chr15:55233839-55233840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200162989	chr15:55233859-55233860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs374939528	chr15:55233866-55233867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565308456	chr15:55233895-55233896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs142410347	chr15:55233949-55233950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs34064681	chr15:55233956-55233957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs8042097	chr15:55233967-55233968	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs530876039	chr15:55233978-55233979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs8042111	chr15:55233979-55233980	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs8042496	chr15:55234009-55234010	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs539042944	chr15:55234045-55234046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182798080	chr15:55234083-55234084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs550204021	chr15:55234085-55234086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62018769	chr15:55234107-55234108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62018770	chr15:55234113-55234114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566452188	chr15:55234200-55234201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs535130582	chr15:55234205-55234206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs570095224	chr15:55234213-55234214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs555586393	chr15:55234214-55234215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs532493269	chr15:55234219-55234220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs188419603	chr15:55234225-55234226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs552689219	chr15:55234228-55234229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs373753740	chr15:55234328-55234329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544535020	chr15:55234337-55234338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192296083	chr15:55234377-55234378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs566117049	chr15:55234398-55234399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143950563	chr15:55234400-55234401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs540286372	chr15:55234468-55234469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs183721562	chr15:55234483-55234484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs187699421	chr15:55234486-55234487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543143355	chr15:55234487-55234488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568436122	chr15:55234491-55234492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535797328	chr15:55234497-55234498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530709298	chr15:55234514-55234515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192360871	chr15:55234522-55234523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs570678540	chr15:55234589-55234590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs148231149	chr15:55234654-55234655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs141251028	chr15:55234679-55234680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74719282	chr15:55234699-55234700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs56036017	chr15:55234736-55234737	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs150779086	chr15:55234751-55234752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs372361518	chr15:55234754-55234755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558653690	chr15:55234775-55234776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572114343	chr15:55234781-55234782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569134648	chr15:55234812-55234813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Urothelial carcinoma	21177765	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	17440070	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55225200-55252800	Weak transcription	Aorta	Aorta
2	chr15:55232200-55233800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:55243400-55244800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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