Variant report
Variant | nsv933040 |
---|---|
Chromosome Location | chr22:23747565-23922420 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2711)
- CpG islands (count:1465)
- Chromatin interactive region (count:62)
- LncRNA region (count:33)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr22:23878382-23878550 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr22:23863258-23864255 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr22:23881714-23882110 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr22:23810108-23810480 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr22:23858600-23858782 | HepG2 | liver: | n/a | n/a |
6 | ATF3 | chr22:23863940-23864254 | A549 | lung: | n/a | n/a |
7 | BACH1 | chr22:23863421-23863432 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | BACH1 | chr22:23863886-23864230 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr22:23885329-23885345 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BATF | chr22:23815225-23815371 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr22:23827789-23828067 | GM12878 | blood: | n/a | n/a |
12 | BATF | chr22:23819974-23820417 | GM12878 | blood: | n/a | n/a |
13 | BATF | chr22:23814219-23814432 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr22:23767816-23768461 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr22:23768066-23768391 | GM12878 | blood: | n/a | n/a |
16 | BATF | chr22:23828883-23829053 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr22:23881839-23882094 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr22:23817542-23817698 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr22:23827783-23828060 | GM12878 | blood: | n/a | n/a |
20 | BCL11A | chr22:23767732-23768425 | GM12878 | blood: | n/a | chr22:23767902-23767911 |
21 | BCL11A | chr22:23827797-23828034 | GM12878 | blood: | n/a | n/a |
22 | BCL11A | chr22:23828873-23829061 | GM12878 | blood: | n/a | n/a |
23 | BCL11A | chr22:23814300-23814538 | GM12878 | blood: | n/a | n/a |
24 | BCL11A | chr22:23827775-23828065 | GM12878 | blood: | n/a | n/a |
25 | BCL11A | chr22:23768017-23768343 | GM12878 | blood: | n/a | n/a |
26 | BCL11A | chr22:23814796-23814963 | GM12878 | blood: | n/a | n/a |
27 | BCL11A | chr22:23819918-23820441 | GM12878 | blood: | n/a | n/a |
28 | BCL11A | chr22:23820122-23820430 | GM12878 | blood: | n/a | n/a |
29 | BCL3 | chr22:23863677-23864155 | A549 | lung: | n/a | n/a |
30 | BCLAF1 | chr22:23881803-23882075 | GM12878 | blood: | n/a | n/a |
31 | BHLHE40 | chr22:23827779-23827957 | HepG2 | liver: | n/a | n/a |
32 | BHLHE40 | chr22:23775264-23775617 | HepG2 | liver: | n/a | n/a |
33 | BHLHE40 | chr22:23863386-23864287 | HepG2 | liver: | n/a | chr22:23864105-23864121 chr22:23864113-23864129 chr22:23864172-23864188 |
34 | BHLHE40 | chr22:23800642-23800955 | HepG2 | liver: | n/a | n/a |
35 | BHLHE40 | chr22:23810980-23811147 | HepG2 | liver: | n/a | n/a |
36 | BHLHE40 | chr22:23881814-23882106 | GM12878 | blood: | n/a | n/a |
37 | BHLHE40 | chr22:23810674-23810961 | HepG2 | liver: | n/a | n/a |
38 | BHLHE40 | chr22:23810151-23810450 | HepG2 | liver: | n/a | n/a |
39 | BHLHE40 | chr22:23828739-23829217 | HepG2 | liver: | n/a | n/a |
40 | BHLHE40 | chr22:23810125-23810453 | HepG2 | liver: | n/a | n/a |
41 | BHLHE40 | chr22:23773469-23773794 | K562 | blood: | n/a | n/a |
42 | BRCA1 | chr22:23864003-23864278 | Hela-S3 | cervix: | n/a | n/a |
43 | CBX3 | chr22:23773490-23773804 | K562 | blood: | n/a | n/a |
44 | CBX3 | chr22:23788342-23788762 | K562 | blood: | n/a | n/a |
45 | CBX3 | chr22:23775349-23775809 | K562 | blood: | n/a | n/a |
46 | CBX3 | chr22:23788409-23788674 | K562 | blood: | n/a | n/a |
47 | CBX3 | chr22:23875553-23875885 | K562 | blood: | n/a | n/a |
48 | CBX3 | chr22:23786453-23786683 | K562 | blood: | n/a | n/a |
49 | CBX3 | chr22:23881715-23882150 | K562 | blood: | n/a | n/a |
50 | CBX3 | chr22:23889426-23889665 | K562 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:23867429-23867479 | ECC-1 | luminal epithelium: | n/a |
2 | chr22:23867429-23867479 | ECC-1 | luminal epithelium: | n/a |
3 | chr22:23908337-23908387 | GM12891 | blood: | n/a |
4 | chr22:23804719-23804769 | Jurkat | blood: | n/a |
5 | chr22:23864344-23864394 | HMEC | breast: | n/a |
6 | chr22:23799750-23799800 | HNPCEpiC | eye: | n/a |
7 | chr22:23922378-23922428 | H1-hESC | embryonic stem cell: | embryo |
8 | chr22:23922378-23922428 | A549 | lung: | n/a |
9 | chr22:23863649-23863699 | K562 | blood: | n/a |
10 | chr22:23802708-23802758 | IMR90 | lung: | fetal |
11 | chr22:23915573-23915623 | HNPCEpiC | eye: | n/a |
12 | chr22:23908273-23908323 | AG09319 | gingival: | n/a |
13 | chr22:23864344-23864394 | SK-N-SH_RA | brain: | n/a |
14 | chr22:23908225-23908275 | HRPEpiC | eye: | n/a |
15 | chr22:23908225-23908275 | BE2_C | brain: | n/a |
16 | chr22:23799750-23799800 | MCF-7 | breast: | n/a |
17 | chr22:23877425-23877475 | BJ | skin: | n/a |
18 | chr22:23802708-23802758 | BE2_C | brain: | n/a |
19 | chr22:23805705-23805755 | ProgFib | skin: | n/a |
20 | chr22:23801478-23801528 | U87 | brain: | n/a |
21 | chr22:23911237-23911287 | Jurkat | blood: | n/a |
22 | chr22:23908225-23908275 | NH-A | brain: | n/a |
23 | chr22:23909533-23909583 | HRCEpiC | kidney: | n/a |
24 | chr22:23799750-23799800 | HRE | kidney: | n/a |
25 | chr22:23864344-23864394 | AG04449 | skin: | fetal |
26 | chr22:23911237-23911287 | Caco-2 | colon: | n/a |
27 | chr22:23864945-23864995 | GM12892 | blood: | n/a |
28 | chr22:23799750-23799800 | GM12891 | blood: | n/a |
29 | chr22:23802502-23802552 | HEEpiC | esophagus: | n/a |
30 | chr22:23867429-23867479 | AG04449 | skin: | fetal |
31 | chr22:23908776-23908826 | NH-A | brain: | n/a |
32 | chr22:23805705-23805755 | SK-N-MC | brain: | n/a |
33 | chr22:23863649-23863699 | HEK293 | kidney: | embryo |
34 | chr22:23909177-23909227 | HEEpiC | esophagus: | n/a |
35 | chr22:23915573-23915623 | HPAEpiC | pulmonary alveolar: | n/a |
36 | chr22:23877425-23877475 | Hepatocyte | liver: | n/a |
37 | chr22:23908337-23908387 | GM12892 | blood: | n/a |
38 | chr22:23802708-23802758 | Jurkat | blood: | n/a |
39 | chr22:23864945-23864995 | BE2_C | brain: | n/a |
40 | chr22:23908273-23908323 | SK-N-SH | brain: | n/a |
41 | chr22:23860693-23860743 | H1-hESC | embryonic stem cell: | embryo |
42 | chr22:23805705-23805755 | HRE | kidney: | n/a |
43 | chr22:23805705-23805755 | LNCaP | prostate: | n/a |
44 | chr22:23877425-23877475 | RPTEC | kidney: | n/a |
45 | chr22:23908225-23908275 | SAEC | small airway: | n/a |
46 | chr22:23802708-23802758 | GM19239 | blood: | n/a |
47 | chr22:23805705-23805755 | NHDF-neo | bronchial: | n/a |
48 | chr22:23804719-23804769 | Caco-2 | colon: | n/a |
49 | chr22:23799750-23799800 | ovcar-3 | ovarian: | n/a |
50 | chr22:23801478-23801528 | HCPEpiC | choroid plexus: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:23874366..23877000-chr22:23881592..23884762,3 | K562 | blood: | |
2 | chr22:23883865..23884647-chr22:23933037..23933956,4 | MCF-7 | breast: | |
3 | chr22:23772556..23774777-chr7:1920577..1922999,2 | K562 | blood: | |
4 | chr22:23811117..23813674-chr22:23862180..23864787,2 | MCF-7 | breast: | |
5 | chr22:23771574..23774271-chr7:1915099..1916676,3 | K562 | blood: | |
6 | chr19:47251886..47252386-chr22:23844118..23844644,2 | HCT-116 | colon: | |
7 | chr22:23769141..23771372-chr22:23773918..23775518,2 | MCF-7 | breast: | |
8 | chr22:23875208..23878117-chr22:23883264..23885311,3 | MCF-7 | breast: | |
9 | chr22:23745391..23747934-chr22:23759747..23762327,2 | MCF-7 | breast: | |
10 | chr22:23744538..23745044-chr22:23881664..23882396,2 | K562 | blood: | |
11 | chr22:23892892..23894631-chr22:23897387..23899648,2 | K562 | blood: | |
12 | chr22:23881511..23882334-chr22:23933445..23934019,2 | K562 | blood: | |
13 | chr22:23874366..23877000-chr22:23881592..23884762,3 | K562 | blood: | |
14 | chr22:23883630..23884898-chr22:24191414..24192261,3 | K562 | blood: | |
15 | chr22:23905464..23907819-chr22:23909904..23911511,2 | K562 | blood: | |
16 | chr22:23920539..23922583-chr22:23925268..23927235,2 | K562 | blood: | |
17 | chr22:23767599..23770526-chr22:23770883..23773096,2 | K562 | blood: | |
18 | chr22:23858440..23860461-chr22:23862149..23863761,2 | MCF-7 | breast: | |
19 | chr22:23769141..23771372-chr22:23773918..23775518,2 | MCF-7 | breast: | |
20 | chr22:23859430..23862351-chr22:23863898..23865581,2 | K562 | blood: | |
21 | chr22:23868145..23870086-chr22:23875004..23877580,2 | K562 | blood: | |
22 | chr22:23891421..23893937-chr22:23894795..23897461,2 | MCF-7 | breast: | |
23 | chr22:23868112..23870086-chr22:23875004..23877580,3 | K562 | blood: | |
24 | chr22:23744407..23745113-chr22:23907526..23908061,2 | MCF-7 | breast: | |
25 | chr22:23856231..23859359-chr22:23861077..23864604,3 | MCF-7 | breast: | |
26 | chr22:23770302..23775681-chr7:1914349..1918723,8 | MCF-7 | breast: | |
27 | chr22:23773942..23774594-chr7:1915027..1915991,2 | MCF-7 | breast: | |
28 | chr22:23874575..23877000-chr22:23881592..23883408,2 | K562 | blood: | |
29 | chr22:23771574..23774271-chr7:1915104..1916676,2 | K562 | blood: | |
30 | chr22:23863382..23864094-chr3:149094164..149094990,2 | Hela-S3 | cervix: | |
31 | chr22:23895065..23897236-chr22:23904486..23906472,2 | K562 | blood: | |
32 | chr22:23858440..23860461-chr22:23862149..23863761,2 | MCF-7 | breast: | |
33 | chr22:23891421..23893937-chr22:23894795..23897461,2 | MCF-7 | breast: | |
34 | chr22:23744768..23746471-chr22:23859357..23862197,2 | K562 | blood: | |
35 | chr22:23893247..23893747-chr9:132157667..132158492,2 | Hela-S3 | cervix: | |
36 | chr22:23856231..23859359-chr22:23861077..23864604,3 | MCF-7 | breast: | |
37 | chr22:23301061..23301948-chr22:23881493..23882402,2 | K562 | blood: | |
38 | chr22:23905464..23907819-chr22:23909904..23911511,2 | K562 | blood: | |
39 | chr22:23804034..23806130-chr22:23807353..23810139,2 | K562 | blood: | |
40 | chr22:23767599..23770526-chr22:23770883..23773096,2 | K562 | blood: | |
41 | chr22:23895065..23897236-chr22:23904486..23906472,2 | K562 | blood: | |
42 | chr22:23868112..23870086-chr22:23875004..23877580,3 | K562 | blood: | |
43 | chr22:23871169..23871741-chr9:132168269..132168973,2 | Hela-S3 | cervix: | |
44 | chr22:23744374..23745494-chr22:23881473..23882515,11 | MCF-7 | breast: | |
45 | chr22:23859430..23862351-chr22:23863898..23865581,2 | K562 | blood: | |
46 | chr22:23868145..23870086-chr22:23875004..23877580,2 | K562 | blood: | |
47 | chr22:23849776..23850286-chr9:132211065..132211602,2 | MCF-7 | breast: | |
48 | chr22:23856493..23858468-chr22:23863057..23865476,2 | K562 | blood: | |
49 | chr22:23875211..23877435-chr22:24108906..24110588,2 | MCF-7 | breast: | |
50 | chr22:23870628..23873607-chr22:23875674..23878639,2 | MCF-7 | breast: |
(count:33 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RGL4-3 | chr22:23893497-23894217 | XLOC_014174 |
2 | lnc-RGL4-4 | chr22:23838524-23838909 | XLOC_014172 |
3 | lnc-RGL4-2 | chr22:23909251-23909511 | ENSG00000224277.1 |
4 | lnc-IGLL1-2 | chr22:23825255-23825313 | ENSG00000178248 |
5 | lnc-IGLL1-2 | chr22:23829066-23829093 | ENSG00000178248 |
6 | lnc-RGL4-3 | chr22:23894435-23894725 | XLOC_014174 |
7 | lnc-RGL4-2 | chr22:23910239-23910284 | XLOC_014175 |
8 | lnc-RGL4-4 | chr22:23852140-23852384 | XLOC_014172 |
9 | lnc-RGL4-2 | chr22:23910747-23910829 | ENSG00000224277.1 |
10 | lnc-IGLL1-2 | chr22:23824762-23824792 | ENSG00000178248 |
11 | lnc-BCR-2 | chr22:23775751-23776248 | ENSG00000234928 |
12 | lnc-IGLL1-2 | chr22:23812502-23812523 | ENSG00000178248 |
13 | lnc-RGL4-2 | chr22:23910239-23910284 | ENSG00000224277.1 |
14 | lnc-RGL4-2 | chr22:23910747-23910829 | XLOC_014175 |
15 | lnc-RGL4-4 | chr22:23838524-23838710 | XLOC_014172 |
16 | lnc-RGL4-2 | chr22:23915652-23915694 | ENSG00000224277.1 |
17 | lnc-RGL4-4 | chr22:23838524-23838710 | XLOC_014172 |
18 | lnc-BCR-2 | chr22:23776358-23776522 | ENSG00000234928 |
19 | lnc-RGL4-2 | chr22:23914733-23914811 | XLOC_014175 |
20 | lnc-RGL4-4 | chr22:23834998-23835089 | XLOC_014172 |
21 | lnc-IGLL1-2 | chr22:23812995-23813350 | ENSG00000178248 |
22 | lnc-IGLL1-2 | chr22:23816064-23816125 | ENSG00000178248 |
23 | lnc-BCR-2 | chr22:23776747-23776917 | ENSG00000234928 |
24 | lnc-RGL4-2 | chr22:23909251-23909511 | XLOC_014175 |
25 | lnc-RGL4-4 | chr22:23834998-23835089 | XLOC_014172 |
26 | lnc-RGL4-2 | chr22:23915210-23915309 | XLOC_014175 |
27 | lnc-RGL4-4 | chr22:23854168-23854172 | XLOC_014172 |
28 | lnc-RGL4-4 | chr22:23852140-23852694 | XLOC_014172 |
29 | lnc-BCR-2 | chr22:23776747-23776918 | ENSG00000234928 |
30 | lnc-IGLL1-2 | chr22:23822604-23822687 | ENSG00000178248 |
31 | lnc-IGLL1-2 | chr22:23812181-23812224 | ENSG00000178248 |
32 | lnc-BCR-2 | chr22:23777011-23777258 | ENSG00000234928 |
33 | lnc-IGLL1-2 | chr22:23815565-23815598 | ENSG00000178248 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000224277 | TF binding region |
ENSG00000178248 | TF binding region |
ENSG00000227755 | TF binding region |
ENSG00000234928 | TF binding region |
ZDHHC8P1 | TF binding region |
ENSG00000225413 | TF binding region |
ENSG00000224277 | CpG island |
ENSG00000178248 | CpG island |
ENSG00000227755 | CpG island |
ENSG00000234928 | CpG island |
ZDHHC8P1 | CpG island |
ENSG00000225413 | CpG island |
ENSG00000250479 | chromatin interactions |
ENSG00000128322 | chromatin interactions |
ENSG00000099953 | chromatin interactions |
ENSG00000133519 | chromatin interactions |
ENSG00000181027 | chromatin interactions |
ENSG00000272733 | chromatin interactions |
NFE2L1 | miRNA target sites |
NFE2L2 | miRNA target sites |
RUNX1 | miRNA target sites |
SATB1 | miRNA target sites |
NFATC3 | miRNA target sites |
PI4KB | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs575642543 | chr22:23747573-23747574 | Enhancers Bivalent Enhancer Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs577198434 | chr22:23747592-23747593 | Enhancers Bivalent Enhancer Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs546077535 | chr22:23747595-23747596 | Enhancers Bivalent Enhancer Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs111523819 | chr22:23747596-23747597 | Enhancers Bivalent Enhancer Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs368118042 | chr22:23747598-23747599 | Enhancers Bivalent Enhancer Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs35799608 | chr22:23747610-23747611 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
7 | rs34223461 | chr22:23747624-23747625 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
8 | rs11090245 | chr22:23747657-23747658 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
9 | rs527396685 | chr22:23747659-23747660 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs547207611 | chr22:23747660-23747661 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs13056272 | chr22:23747665-23747666 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
12 | rs140010203 | chr22:23747677-23747678 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs185891167 | chr22:23747714-23747715 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs374467986 | chr22:23747719-23747720 | Enhancers Bivalent Enhancer Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs74743789 | chr22:23747793-23747794 | Enhancers Bivalent Enhancer Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs79325976 | chr22:23747819-23747820 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs9624143 | chr22:23747870-23747871 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
18 | rs143714600 | chr22:23747885-23747886 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs534280893 | chr22:23747920-23747921 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs554023386 | chr22:23747935-23747936 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs550289590 | chr22:23747936-23747937 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs577162641 | chr22:23747963-23747964 | Bivalent Enhancer Enhancers Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs539462132 | chr22:23748006-23748007 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs556446908 | chr22:23748018-23748019 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs117460560 | chr22:23748043-23748044 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs113279376 | chr22:23748072-23748073 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs368400111 | chr22:23748073-23748074 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs34340351 | chr22:23748126-23748127 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs577772761 | chr22:23748135-23748136 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs5751648 | chr22:23748149-23748150 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
31 | rs75454165 | chr22:23748206-23748207 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs568819353 | chr22:23748292-23748293 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs540082897 | chr22:23748325-23748326 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs151264149 | chr22:23748332-23748333 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs115995208 | chr22:23748336-23748337 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs139572160 | chr22:23748350-23748351 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs7292300 | chr22:23748369-23748370 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
38 | rs369313609 | chr22:23748371-23748372 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs531868908 | chr22:23748402-23748403 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs149732149 | chr22:23748451-23748452 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs200188297 | chr22:23748463-23748464 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs71200859 | chr22:23748465-23748466 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs371341649 | chr22:23748466-23748467 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs373184048 | chr22:23748471-23748472 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs534169970 | chr22:23748496-23748497 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs373216582 | chr22:23748506-23748507 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs368468781 | chr22:23748521-23748522 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs386820065 | chr22:23748523-23748524 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs371049997 | chr22:23748525-23748526 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs370098651 | chr22:23748528-23748529 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Velocardiofacial syndrome | 20111667 | CNVD |
Medulloblastoma | 21979893 | CNVD |
sporadic solitary meningiomas | 19589153 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Autism | 22495311 | CNVD |
Emanuel syndrome | 21549014 | CNVD |
Digeorge syndrome | 22283845 | CNVD |
Schizophrenia | 17504246 | CNVD |
Digeorge syndrome | 18033723 | CNVD |
22q11 deletion syndrome | 17034021 | CNVD |
22q11 deletion syndrome | 22511897 | CNVD |
22q11 deletion syndrome | 16829213 | CNVD |
Autism | 22067053 | CNVD |
Autism | 19218893 | CNVD |
Biliary cancer | 22067053 | CNVD |
Congenital heart defect | 21390462 | CNVD |
Digeorge syndrome | 16617304 | CNVD |
Emanuel syndrome | 18184694 | CNVD |
Non-syndromic sensorineural hearing loss | 18184694 | CNVD |
Obsessive-compulsive disorder | 22067053 | CNVD |
Psychosis | 22067053 | CNVD |
Schizophrenia | 19415332 | CNVD |
Schizophrenia | 20587603 | CNVD |
Shprintzen syndrome | 19443537 | CNVD |
absent pulmonary valve syndrome | 16795129 | CNVD |
language delay | 22067053 | CNVD |
periventricular nodular heterotopia | 20648244 | CNVD |
renal disease | 17924346 | CNVD |
Schizophrenia | 20433910 | CNVD |
22q11 deletion syndrome | 17028864 | CNVD |
Schizophrenia | 16969581 | CNVD |
Non-syndromic sensorineural hearing loss | 17135275 | CNVD |
velo-cardio-facial syndrome | 17135275 | CNVD |
Digeorge syndrome | 18787571 | CNVD |
Autism | 18925931 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
22q11.2 microdeletion syndrome | 21547621 | CNVD |
Congenital heart defect | 21308838 | CNVD |
Digeorge syndrome | 16512914 | CNVD |
Digeorge syndrome | 20954168 | CNVD |
Nuchal translucency | 21837766 | CNVD |
Right aortic arch in the fetus | 17066500 | CNVD |
Shprintzen syndrome | 17117043 | CNVD |
Tetralogy of fallot | 17405110 | CNVD |
Velocardiofacial syndrome | 20140301 | CNVD |
Velocardiofacial syndrome | 16512914 | CNVD |
bone mass and metabolism | 20516202 | CNVD |
choanal atresia | 18209138 | CNVD |
extracardiac malformations | 17086578 | CNVD |
fetal heart defects | 21308838 | CNVD |
parathyroid gland dysfunction | 16793949 | CNVD |
prenatal diagnosis | 20453657 | CNVD |
velopharyngeal insufficiency | 19620585 | CNVD |
Prader-willi syndrome | 20942916 | CNVD |
22q11 deletion syndrome | 17653112 | CNVD |
Chronic myelomonocytic leukemia | 16760666 | CNVD |
Non-syndromic sensorineural hearing loss | 16829213 | CNVD |
Non-syndromic sensorineural hearing loss | 16760666 | CNVD |
Chordoma | 21602918 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Congenital heart defect | 22511896 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Seminomas | 18059402 | CNVD |
Cancer | 16751803 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Metachromatic leukodystrophy | 18421352 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Breast cancer | 21858162 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21509527 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Cat eye syndrome | 21549014 | CNVD |
Digeorge syndrome | 21549014 | CNVD |
22q11.2 microdeletion syndrome | 22051516 | CNVD |
22q11.2 microdeletion syndrome | 18483005 | CNVD |
22q11.2 microdeletion syndrome | 19565140 | CNVD |
22q11.2 microdeletion syndrome | 20396437 | CNVD |
22q11.2 microdeletion syndrome | 21390462 | CNVD |
22q11.2 microdeletion syndrome | 21573985 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 20970697 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Congenital heart defect | 21257016 | CNVD |
Developmental delay | 18414209 | CNVD |
DiGeorge-Velo cardiofacial | 19284877 | CNVD |
Epilepsy | 20970697 | CNVD |
Heart disease | 20551144 | CNVD |
Hughes'' syndrome | 16595601 | CNVD |
Mental retardation | 18414209 | CNVD |
Okamoto syndrome | 19046188 | CNVD |
Primary immunodeficiency | 22566803 | CNVD |
Schizophrenia | 20877625 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Velocardiofacial syndrome | 17556857 | CNVD |
Velocardiofacial syndrome | 20206275 | CNVD |
Velocardiofacial syndrome | 20970697 | CNVD |
delayed speech development | 21274400 | CNVD |
velo-cardio-facial syndrome | 16511839 | CNVD |
velo-cardio-facial syndrome | 21763005 | CNVD |
22q11.2 microdeletion syndrome | 18799940 | CNVD |
Digeorge syndrome | 20877625 | CNVD |
22q11.2 microdeletion syndrome | 18923514 | CNVD |
Congenital heart defect | 22185286 | CNVD |
DiGeorge-Velo cardiofacial | 16773131 | CNVD |
Digeorge syndrome | 20186050 | CNVD |
velo-cardio-facial conotruncal-face syndrome | 20186050 | CNVD |
22q11.2 microdeletion syndrome | 22116936 | CNVD |
Disorders of sex development | 22290220 | CNVD |
22q11.2 duplication syndrome | 18923514 | CNVD |
Autism | 22095694 | CNVD |
Mental retardation | 19951919 | CNVD |
Honadal dysgenesis | 21048976 | CNVD |
Mental retardation | 16773131 | CNVD |
22q11.2 microdeletion syndrome | 22395003 | CNVD |
22q11.2 microdeletion syndrome | 18691436 | CNVD |
22q11.2 microdeletion syndrome | 18053182 | CNVD |
22q11.2 microdeletion syndrome | 18324686 | CNVD |
22q11.2 microdeletion syndrome | 20074913 | CNVD |
Congenital heart defect | 20802965 | CNVD |
Congenital heart defect | 21134246 | CNVD |
DiGeorge syndrome | 19040613 | CNVD |
DiGeorge-Velo cardiofacial | 18179902 | CNVD |
Digeorge syndrome | 18172682 | CNVD |
Digeorge syndrome | 22470819 | CNVD |
Digeorge syndrome | 21364285 | CNVD |
Neuroendocrine carcinoma | 22470819 | CNVD |
Non-syndromic sensorineural hearing loss | 20069674 | CNVD |
Smith-Magenis syndrome | 18301319 | CNVD |
Tetralogy of fallot | 19144126 | CNVD |
Velo-cardio-facial syndrome | 21364285 | CNVD |
Velocardiofacial syndrome | 18788013 | CNVD |
cardiac malformation | 20573211 | CNVD |
cardiac malformation | 18172682 | CNVD |
velo-cardio-facial syndrome | 18636631 | CNVD |
Schizophrenia | 21822266 | CNVD |
synaptic plasticity | 21368174 | CNVD |
Schizophrenia | 18043741 | CNVD |
sporadic birth defects | 19047251 | CNVD |
Autism | 19046189 | CNVD |
DiGeorge-Velo cardiofacial | 19047251 | CNVD |
Hypernasal speech | 21968682 | CNVD |
Mental retardation | 17339581 | CNVD |
diverse phenotype | 16760730 | CNVD |
Mental retardation | 20152051 | CNVD |
Breast cancer | 16608533 | CNVD |
Melanoma | 18172304 | CNVD |
Ovarian cancer | 22174824 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
DiGeorge-Velo cardiofacial | 17597781 | CNVD |
Digeorge syndrome | 17576883 | CNVD |
Schizophrenia | 18806272 | CNVD |
Schizophrenia | 18990708 | CNVD |
Velocardiofacial syndrome | 17576883 | CNVD |
Schizophrenia | 20075378 | CNVD |
Neurodevelopmental disorder | 17015230 | CNVD |
Neuropsychiatric disorder | 20069037 | CNVD |
Williams-beuren syndrome | 18553513 | CNVD |
Emphysema | 19352772 | CNVD |
Cancer | 17440070 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Asthma | 21956041 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Colorectal cancer | 21128281 | CNVD |
Systemic lupus erythematosus | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
22q11.23 microdeletion syndrome | 19193630 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Chronic myeloid leukemia | 21384125 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 21785460 | CNVD |
Medullary thyroid carcinoma | 18765511 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Schizophrenia | 17989066 | CNVD |
Cancer | 20164919 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Li-fraumeni syndrome | 18685109 | CNVD |
Breast cancer | 20409316 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Cancer | 19424424 | CNVD |
Non-syndromic sensorineural hearing loss | 17289997 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
abnormal development | 18461090 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:23745000-23754600 | Weak transcription | Right Atrium | heart |
2 | chr22:23745400-23747600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
3 | chr22:23745400-23757400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
4 | chr22:23745600-23747600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
5 | chr22:23745800-23747800 | Weak transcription | Brain Germinal Matrix | brain |
6 | chr22:23746600-23747600 | Enhancers | Placenta | Placenta |
7 | chr22:23747000-23748000 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
8 | chr22:23747000-23748000 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
9 | chr22:23747200-23747800 | Enhancers | H1 Cell Line | embryonic stem cell |
10 | chr22:23747400-23747800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
11 | chr22:23747400-23748000 | Bivalent Enhancer | H1 Derived Mesenchymal Stem Cells | ES cell derived |
12 | chr22:23747400-23748000 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
13 | chr22:23747400-23749400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
14 | chr22:23747600-23747800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
15 | chr22:23747800-23748000 | Bivalent Enhancer | Foreskin Fibroblast Primary Cells skin02 | Skin |
16 | chr22:23747800-23748000 | Enhancers | Brain Germinal Matrix | brain |
17 | chr22:23747800-23748200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
18 | chr22:23748000-23748400 | Weak transcription | Brain Germinal Matrix | brain |
19 | chr22:23748000-23757200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
20 | chr22:23749400-23749800 | Enhancers | HUES6 Cell Line | embryonic stem cell |
21 | chr22:23749400-23750000 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
22 | chr22:23750400-23751200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
23 | chr22:23750800-23751000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
24 | chr22:23750800-23751200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
25 | chr22:23752600-23755600 | Enhancers | Fetal Thymus | thymus |
26 | chr22:23752800-23754800 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
27 | chr22:23753200-23754400 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
28 | chr22:23753200-23754800 | Enhancers | Thymus | Thymus |
29 | chr22:23753400-23754400 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
30 | chr22:23753400-23754800 | Enhancers | Primary T cells from cord blood | blood |
31 | chr22:23753400-23754800 | Enhancers | Primary T helper cells fromperipheralblood | blood |
32 | chr22:23753400-23755800 | Enhancers | Dnd41 | blood |
33 | chr22:23753600-23753800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
34 | chr22:23753800-23754400 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
35 | chr22:23754200-23755000 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
36 | chr22:23754400-23755000 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
37 | chr22:23754400-23755200 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
38 | chr22:23755200-23755400 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
39 | chr22:23755600-23760200 | Weak transcription | Fetal Thymus | thymus |
40 | chr22:23757200-23757800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
41 | chr22:23757400-23758000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
42 | chr22:23757400-23758400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
43 | chr22:23757400-23759000 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
44 | chr22:23757800-23758000 | Flanking Active TSS | iPS DF 19.11 Cell Line | embryonic stem cell |
45 | chr22:23757800-23758000 | Bivalent Enhancer | Foreskin Melanocyte Primary Cells skin01 | Skin |
46 | chr22:23757800-23758400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
47 | chr22:23758000-23773000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
48 | chr22:23758200-23759000 | Enhancers | Adipose Nuclei | Adipose |
49 | chr22:23758400-23758800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
50 | chr22:23758400-23759800 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |