Variant report

Variant	nsv933059
Chromosome Location	chr6:65726611-65854649
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:62312608..62314638-chr6:65744579..65746564,2	MCF-7	breast:
2	chr6:65781439..65783033-chr6:65783370..65784893,2	MCF-7	breast:
3	chr6:65821770..65824951-chr6:65826871..65829970,3	K562	blood:
4	chr6:65778187..65780499-chr6:65782117..65784614,2	K562	blood:
5	chr6:65761200..65763394-chr6:65766854..65768992,2	K562	blood:
6	chr6:65821523..65823761-chr6:65825584..65828218,2	MCF-7	breast:
7	chr6:65761200..65763394-chr6:65766854..65768992,2	K562	blood:
8	chr6:65781439..65783033-chr6:65783370..65784893,2	MCF-7	breast:
9	chr6:65821523..65823761-chr6:65825584..65828218,2	MCF-7	breast:
10	chr6:65778187..65780499-chr6:65782117..65784614,2	K562	blood:
11	chr6:65821770..65824951-chr6:65826871..65829970,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257058	chromatin interactions
ENSG00000124942	chromatin interactions

Extended variants
information (count: 1259 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1259 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551878997	chr6:65730412-65730413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs367585180	chr6:65730413-65730414	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs534606700	chr6:65730416-65730417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs189923261	chr6:65730420-65730421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs563998395	chr6:65730441-65730442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs537215794	chr6:65730475-65730476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs542484467	chr6:65730476-65730477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs536199221	chr6:65730486-65730487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs202049915	chr6:65730492-65730493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs577047663	chr6:65730495-65730496	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs546124782	chr6:65730497-65730498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs559390596	chr6:65730499-65730500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs573150152	chr6:65730544-65730545	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs541834874	chr6:65730563-65730564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs561817182	chr6:65730670-65730671	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs182539891	chr6:65730703-65730704	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs550743171	chr6:65730714-65730715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs564745020	chr6:65730718-65730719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs375194180	chr6:65730739-65730740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs533456986	chr6:65730770-65730771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs187202929	chr6:65730778-65730779	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs191962127	chr6:65730784-65730785	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs150736235	chr6:65730848-65730849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs548231699	chr6:65730858-65730859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs568141310	chr6:65730879-65730880	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs537177568	chr6:65730891-65730892	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs556874060	chr6:65730908-65730909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs72877814	chr6:65730927-65730928	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs185151327	chr6:65730940-65730941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs553196394	chr6:65730950-65730951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs573075520	chr6:65730962-65730963	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs188825440	chr6:65731004-65731005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561778170	chr6:65731047-65731048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575322181	chr6:65731115-65731116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544350150	chr6:65731147-65731148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540734491	chr6:65731189-65731190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564429121	chr6:65731240-65731241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533530175	chr6:65731263-65731264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs565239847	chr6:65731274-65731275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540488144	chr6:65731304-65731305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368634711	chr6:65731309-65731310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs138048879	chr6:65731338-65731339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529643634	chr6:65731339-65731340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549586606	chr6:65731387-65731388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568103219	chr6:65731416-65731417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143394540	chr6:65731423-65731424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550609651	chr6:65731430-65731431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs9342457	chr6:65731445-65731446	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs111879001	chr6:65731471-65731472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs193072893	chr6:65731487-65731488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Epilepsy	20502679	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65730400-65731000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:65731000-65740200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:65738800-65743200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:65739800-65740200	Enhancers	Pancreas	Pancrea
5	chr6:65740200-65740400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:65740200-65740600	ZNF genes & repeats	Pancreas	Pancrea
7	chr6:65743200-65743400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:65767200-65767800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:65767800-65768600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:65774800-65775000	Enhancers	Spleen	Spleen
11	chr6:65784800-65786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:65785400-65786600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:65785800-65786200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:65786600-65788400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:65788400-65788600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:65788600-65789000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:65789800-65791400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:65807800-65808200	Enhancers	Fetal Brain Female	brain
19	chr6:65808000-65808400	Enhancers	Fetal Brain Male	brain
20	chr6:65819600-65819800	Enhancers	Ovary	ovary
21	chr6:65820000-65820400	Enhancers	Fetal Kidney	kidney
22	chr6:65822600-65823600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:65822600-65823800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:65823400-65824000	Enhancers	HUVEC	blood vessel
25	chr6:65826400-65826800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr6:65826800-65827200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:65826800-65827200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:65827200-65827400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:65827400-65828200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:65828000-65828600	Enhancers	Fetal Lung	lung
31	chr6:65828200-65828600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:65833200-65833800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:65833400-65833800	Enhancers	Fetal Lung	lung
34	chr6:65833400-65834000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:65833400-65834000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:65833800-65834000	Enhancers	Fetal Stomach	stomach
37	chr6:65833800-65834800	Weak transcription	Fetal Lung	lung
38	chr6:65834600-65835000	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr6:65834800-65835000	Enhancers	Fetal Stomach	stomach
40	chr6:65834800-65836800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:65835000-65835200	Enhancers	Fetal Lung	lung
42	chr6:65836400-65836600	Enhancers	Fetal Stomach	stomach
43	chr6:65836600-65837000	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links