Variant report

Variant	nsv933081
Chromosome Location	chr6:102124766-102130637
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 207 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:207 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189445941	chr6:102125242-102125243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs548413508	chr6:102125247-102125248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs181553221	chr6:102125273-102125274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs186024288	chr6:102125298-102125299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs533915412	chr6:102125302-102125303	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs142130866	chr6:102125328-102125329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs570440180	chr6:102125343-102125344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs552252010	chr6:102125375-102125376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538096013	chr6:102125438-102125439	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs531892588	chr6:102125484-102125485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs556499678	chr6:102125498-102125499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs151164144	chr6:102125504-102125505	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs535631826	chr6:102125515-102125516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs79332371	chr6:102125561-102125562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs190030274	chr6:102125567-102125568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs540737098	chr6:102125576-102125577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558639972	chr6:102125613-102125614	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs577173031	chr6:102125628-102125629	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs10872739	chr6:102125670-102125671	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs548488570	chr6:102125676-102125677	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs568393085	chr6:102125700-102125701	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs9498667	chr6:102125724-102125725	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs34108258	chr6:102125745-102125746	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs541996423	chr6:102125749-102125750	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553652850	chr6:102125810-102125811	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs560756888	chr6:102125827-102125828	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs181104892	chr6:102125832-102125833	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs570638521	chr6:102125843-102125844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs538714233	chr6:102125856-102125857	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs570304555	chr6:102125869-102125870	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs531325072	chr6:102125968-102125969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs186401627	chr6:102126003-102126004	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs190964437	chr6:102126022-102126023	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs6900995	chr6:102126026-102126027	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs2852563	chr6:102126033-102126034	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs544762526	chr6:102126038-102126039	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs533991633	chr6:102126095-102126096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556751676	chr6:102126231-102126232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs542104652	chr6:102126248-102126249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs182397016	chr6:102126249-102126250	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186427656	chr6:102126293-102126294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs147960209	chr6:102126304-102126305	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs574760637	chr6:102126311-102126312	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs542133090	chr6:102126324-102126325	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs75182156	chr6:102126407-102126408	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs527887739	chr6:102126410-102126411	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs35005439	chr6:102126448-102126449	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs117903297	chr6:102126457-102126458	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs564194868	chr6:102126458-102126459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs542533978	chr6:102126461-102126462	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17170743	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Myelofibrosis	22110671	CNVD
Obesity	21045960	CNVD
Liver carcinoma	19366792	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Urothelial carcinoma	21177765	CNVD
Autism	22543975	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102125200-102125600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:102125400-102125800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:102125600-102129000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:102125800-102126800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:102125800-102130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:102126400-102126800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:102126800-102129600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:102126800-102129600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:102129600-102130000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:102129600-102130400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:102129600-102130600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:102129600-102130800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:102129600-102130800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:102130000-102130400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:102130000-102130600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:102130400-102130800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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