Variant report

Variant	nsv933614
Chromosome Location	chr5:147475325-147475608
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373261963	chr5:147475344-147475345	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs548698887	chr5:147475358-147475359	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs377474032	chr5:147475371-147475372	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs200808369	chr5:147475385-147475386	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6892205	chr5:147475386-147475387	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs142558269	chr5:147475388-147475389	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs375727921	chr5:147475389-147475390	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201354872	chr5:147475420-147475421	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs11958432	chr5:147475488-147475489	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs191384444	chr5:147475500-147475501	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368724574	chr5:147475503-147475504	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557320665	chr5:147475512-147475513	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76839946	chr5:147475513-147475514	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369025546	chr5:147475514-147475515	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs147242208	chr5:147475583-147475584	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs375179336	chr5:147475587-147475588	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs11948406	chr5:147475590-147475591	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs536693555	chr5:147475598-147475599	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18194544	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Renal cell carcinoma	18592004	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Hyperekplexia	16941485	CNVD
Myelofibrosis	22110671	CNVD
Crohn''s disease	20877625	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	17603634	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147464200-147491200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147464400-147488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:147469200-147481400	Weak transcription	Esophagus	oesophagus
4	chr5:147470200-147481200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:147470400-147518400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:147470600-147508400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:147470600-147509000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:147471600-147514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:147472000-147505000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:147472400-147479400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:147472600-147475400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:147472600-147497200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:147473400-147475600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:147474200-147475600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:147474200-147479000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:147474200-147513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:147474800-147476800	Weak transcription	Hela-S3	cervix
18	chr5:147474800-147490600	Weak transcription	NHEK	skin
19	chr5:147475200-147480000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:147475400-147477800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:147475600-147477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:147475600-147478200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links