Variant report

Variant	nsv94522
Chromosome Location	chr15:93306419-93316316
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93314139..93315981-chr15:93421509..93423581,2	MCF-7	breast:
2	chr15:93314575..93317372-chr15:93351909..93353972,2	MCF-7	breast:
3	chr15:93314719..93317520-chr15:93318260..93321146,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD2-10	chr15:93315694-93315782	NONHSAT049659

Variant related genes	Relation type
ENSG00000185442	chromatin interactions

Extended variants
information (count: 448 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:448 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534588655	chr15:93306457-93306458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs56099640	chr15:93306459-93306460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs577859245	chr15:93306484-93306485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs536895249	chr15:93306520-93306521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111889480	chr15:93306526-93306527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573802069	chr15:93306545-93306546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs542676290	chr15:93306575-93306576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs559341937	chr15:93306580-93306581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs71410593	chr15:93306588-93306589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs545379098	chr15:93306589-93306590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs79130165	chr15:93306591-93306592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs79160190	chr15:93306592-93306593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs544830019	chr15:93306595-93306596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs540976161	chr15:93306597-93306598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs71211270	chr15:93306602-93306603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs11637549	chr15:93306603-93306604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs549125882	chr15:93306623-93306624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs28493166	chr15:93306644-93306645	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs528114934	chr15:93306654-93306655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563400724	chr15:93306669-93306670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs551353934	chr15:93306680-93306681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs12594947	chr15:93306681-93306682	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs12910258	chr15:93306688-93306689	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs556751748	chr15:93306690-93306691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370267190	chr15:93306722-93306723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567093326	chr15:93306803-93306804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs536024733	chr15:93306850-93306851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141971267	chr15:93306881-93306882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573287297	chr15:93306918-93306919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs188389765	chr15:93306934-93306935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558871950	chr15:93307057-93307058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112627615	chr15:93307119-93307120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544894492	chr15:93307121-93307122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs556887308	chr15:93307134-93307135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574907367	chr15:93307141-93307142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs377603247	chr15:93307142-93307143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs561544063	chr15:93307173-93307174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs28551094	chr15:93307192-93307193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs138959911	chr15:93307216-93307217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs559230120	chr15:93307248-93307249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561123909	chr15:93307277-93307278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115777690	chr15:93307323-93307324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551096301	chr15:93307345-93307346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs571185646	chr15:93307351-93307352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530733402	chr15:93307358-93307359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550487529	chr15:93307360-93307361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200914377	chr15:93307377-93307378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs199779500	chr15:93307379-93307380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs35351032	chr15:93307380-93307381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs397773106	chr15:93307381-93307382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93295800-93323200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:93304800-93344800	Weak transcription	Aorta	Aorta
3	chr15:93311400-93322800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:93313000-93330400	Weak transcription	Lung	lung
5	chr15:93314200-93314400	Enhancers	Spleen	Spleen
6	chr15:93314400-93316000	Weak transcription	Spleen	Spleen
7	chr15:93315000-93317200	Enhancers	HepG2	liver
8	chr15:93315000-93325200	Weak transcription	Right Ventricle	heart
9	chr15:93315200-93315400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:93315200-93315400	Enhancers	Ovary	ovary
11	chr15:93315200-93315400	Enhancers	Pancreas	Pancrea
12	chr15:93315400-93316600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:93315400-93340200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:93315400-93340400	Weak transcription	Pancreas	Pancrea
15	chr15:93315400-93340600	Weak transcription	Ovary	ovary
16	chr15:93316000-93317200	Enhancers	Spleen	Spleen

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