Variant report

Variant nsv945413
Chromosome Location chr1:242542299-242607506
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:142 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:242485600-242555400 Weak transcription Aorta Aorta
2 chr1:242522600-242555000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:242538000-242555400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:242538600-242549600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:242547000-242547400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:242547200-242548400 Enhancers HUES48 Cell Line embryonic stem cell
7 chr1:242547200-242575200 Weak transcription HMEC breast
8 chr1:242547400-242548000 Enhancers iPS-20b Cell Line embryonic stem cell
9 chr1:242547400-242548000 Enhancers Fetal Brain Male brain
10 chr1:242547400-242548200 Enhancers iPS-18 Cell Line embryonic stem cell
11 chr1:242547400-242555000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:242549600-242549800 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:242549800-242580800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:242553800-242555400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:242555000-242555400 Weak transcription NHEK skin
16 chr1:242555000-242556200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:242555000-242556200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:242555400-242556000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:242555400-242556000 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:242555400-242556000 ZNF genes & repeats Aorta Aorta
21 chr1:242555400-242556000 ZNF genes & repeats NHEK skin
22 chr1:242555600-242556000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
23 chr1:242555800-242556000 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
24 chr1:242556000-242565000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:242556000-242565000 Weak transcription NHEK skin
26 chr1:242556000-242575200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:242556000-242586600 Weak transcription Aorta Aorta
28 chr1:242556200-242569200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:242556200-242570600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:242561600-242562200 Enhancers Brain Inferior Temporal Lobe brain
31 chr1:242561800-242566400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr1:242562000-242562600 Enhancers Brain Angular Gyrus brain
33 chr1:242562800-242563200 Enhancers Fetal Brain Male brain
34 chr1:242565000-242565400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:242565000-242565400 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr1:242565000-242565600 Enhancers NHEK skin
37 chr1:242565400-242572800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:242565600-242567000 Weak transcription NHEK skin
39 chr1:242566400-242566800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
40 chr1:242567800-242569200 Weak transcription NHEK skin
41 chr1:242569200-242569600 Enhancers NHEK skin
42 chr1:242569200-242569800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr1:242569800-242575000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:242571800-242572000 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:242572000-242574200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:242572800-242573800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:242573200-242575400 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:242573800-242575000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:242574800-242584800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr1:242575000-242575800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin

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