Variant report
Variant | nsv946235 |
---|---|
Chromosome Location | chr1:144493025-144510016 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:280)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BATF | chr1:144505988-144506367 | GM12878 | blood: | n/a | chr1:144506225-144506236 |
2 | BATF | chr1:144509060-144509281 | GM12878 | blood: | n/a | n/a |
3 | BATF | chr1:144501231-144502049 | GM12878 | blood: | n/a | chr1:144501567-144501576 |
4 | BATF | chr1:144506111-144506279 | GM12878 | blood: | n/a | chr1:144506225-144506236 |
5 | BATF | chr1:144509096-144509307 | GM12878 | blood: | n/a | n/a |
6 | BATF | chr1:144507461-144507711 | GM12878 | blood: | n/a | n/a |
7 | BATF | chr1:144508099-144508353 | GM12878 | blood: | n/a | n/a |
8 | BATF | chr1:144494382-144494639 | GM12878 | blood: | n/a | n/a |
9 | BATF | chr1:144503041-144503309 | GM12878 | blood: | n/a | n/a |
10 | BATF | chr1:144501613-144502087 | GM12878 | blood: | n/a | n/a |
11 | BCL11A | chr1:144501244-144501475 | GM12878 | blood: | n/a | n/a |
12 | BCL11A | chr1:144501589-144502064 | GM12878 | blood: | n/a | n/a |
13 | BCL11A | chr1:144501112-144501338 | GM12878 | blood: | n/a | n/a |
14 | BCL11A | chr1:144503003-144503238 | GM12878 | blood: | n/a | n/a |
15 | BCL11A | chr1:144506123-144506377 | GM12878 | blood: | n/a | n/a |
16 | BCL11A | chr1:144507164-144507443 | GM12878 | blood: | n/a | n/a |
17 | BCL11A | chr1:144494397-144494666 | GM12878 | blood: | n/a | n/a |
18 | BCL11A | chr1:144494424-144494661 | GM12878 | blood: | n/a | n/a |
19 | BCL11A | chr1:144508971-144509318 | GM12878 | blood: | n/a | n/a |
20 | BCL11A | chr1:144501616-144502097 | GM12878 | blood: | n/a | n/a |
21 | CEBPB | chr1:144496597-144496884 | K562 | blood: | n/a | n/a |
22 | CEBPB | chr1:144494152-144494438 | K562 | blood: | n/a | n/a |
23 | CEBPB | chr1:144494062-144494535 | K562 | blood: | n/a | n/a |
24 | CEBPB | chr1:144496528-144496881 | K562 | blood: | n/a | n/a |
25 | CEBPD | chr1:144494037-144494572 | K562 | blood: | n/a | n/a |
26 | EBF1 | chr1:144492621-144493060 | GM12878 | blood: | n/a | chr1:144492989-144492999 |
27 | EBF1 | chr1:144494338-144494654 | GM12878 | blood: | n/a | n/a |
28 | EBF1 | chr1:144501362-144502100 | GM12878 | blood: | n/a | n/a |
29 | EBF1 | chr1:144502958-144503287 | GM12878 | blood: | n/a | n/a |
30 | EBF1 | chr1:144504809-144505085 | GM12878 | blood: | n/a | n/a |
31 | EBF1 | chr1:144505740-144505899 | GM12878 | blood: | n/a | n/a |
32 | EBF1 | chr1:144501527-144502003 | GM12878 | blood: | n/a | n/a |
33 | EBF1 | chr1:144494426-144494714 | GM12878 | blood: | n/a | n/a |
34 | EBF1 | chr1:144504478-144505038 | GM12878 | blood: | n/a | n/a |
35 | EP300 | chr1:144507191-144507704 | GM12878 | blood: | n/a | n/a |
36 | EP300 | chr1:144501258-144502088 | GM12878 | blood: | n/a | n/a |
37 | EP300 | chr1:144508193-144508450 | GM12878 | blood: | n/a | n/a |
38 | EP300 | chr1:144494335-144494711 | GM12878 | blood: | n/a | n/a |
39 | EP300 | chr1:144507481-144507653 | GM12878 | blood: | n/a | n/a |
40 | FOSL2 | chr1:144501196-144501502 | HepG2 | liver: | n/a | n/a |
41 | FOSL2 | chr1:144507457-144507658 | HepG2 | liver: | n/a | n/a |
42 | FOSL2 | chr1:144508091-144508510 | HepG2 | liver: | n/a | n/a |
43 | FOSL2 | chr1:144505912-144506379 | HepG2 | liver: | n/a | chr1:144505974-144505983 |
44 | FOSL2 | chr1:144505974-144506404 | HepG2 | liver: | n/a | chr1:144505974-144505983 |
45 | FOSL2 | chr1:144494378-144494648 | HepG2 | liver: | n/a | n/a |
46 | FOSL2 | chr1:144508035-144508526 | HepG2 | liver: | n/a | n/a |
47 | FOXA1 | chr1:144507295-144507850 | HepG2 | liver: | n/a | n/a |
48 | FOXA1 | chr1:144494271-144494571 | HepG2 | liver: | n/a | n/a |
49 | FOXA1 | chr1:144504543-144504891 | HepG2 | liver: | n/a | chr1:144504787-144504799 |
50 | FOXA1 | chr1:144506924-144507224 | HepG2 | liver: | n/a | n/a |
No data |
No data |
(count:4 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PPIAL4B-2 | chr1:144506277-144506436 | ENSG00000236943.1 |
2 | lnc-PPIAL4B-2 | chr1:144506277-144506436 | ENSG00000236943.1 |
3 | lnc-PPIAL4B-2 | chr1:144505804-144505925 | ENSG00000236943.1 |
4 | lnc-PPIAL4B-2 | chr1:144506091-144506436 | ENSG00000236943.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000236943 | TF binding region |
RNVU1-5 | TF binding region |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs376349822 | chr1:144493626-144493627 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
2 | rs3009807 | chr1:144494054-144494055 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
3 | rs2923190 | chr1:144494824-144494825 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
4 | rs56334001 | chr1:144494862-144494863 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
5 | rs2994171 | chr1:144495026-144495027 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
6 | rs200917218 | chr1:144495498-144495499 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
7 | rs7414954 | chr1:144495549-144495550 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
8 | rs587746460 | chr1:144495555-144495556 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
9 | rs7417211 | chr1:144495604-144495605 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
10 | rs7416255 | chr1:144495614-144495615 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
11 | rs7415421 | chr1:144495747-144495748 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
12 | rs376810194 | chr1:144495818-144495819 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
13 | rs61802348 | chr1:144506182-144506183 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
14 | rs61802349 | chr1:144506283-144506284 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
15 | rs557084 | chr1:144506348-144506349 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
16 | rs144944932 | chr1:144507306-144507307 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs61802353 | chr1:144507407-144507408 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs11485972 | chr1:144507590-144507591 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 17603634 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Schizophrenia | 19415332 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Cancer | 21129771 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Autosomal dominant nocturnal frontal lobe epilepsy | 18472482 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Non-small cell lung cancer | 20864512 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Thrombocytopenia-absent radius syndrome | 21933853 | CNVD |
Psychiatric disorder | 22848183 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Liposarcoma | 21253554 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 20409316 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 17393978 | CNVD |
Cervical cancer | 21062161 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 21183584 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Lung cancer | 18438408 | CNVD |
Rett syndrome | 21593744 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Systemic lupus erythematosus | 21956041 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 17133270 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Cervical cancer | 21063398 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 20632083 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Medulloblastoma | 21292688 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 21264507 | CNVD |
Multiple myeloma | 21628407 | CNVD |
Cancer | 16751803 | CNVD |
Prostate cancer | 16705090 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Breast cancer | 17850661 | CNVD |
Breast cancer | 16461572 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Neuroblastoma | 21899760 | CNVD |
Breast cancer | 17899364 | CNVD |
Bladder cancer | 19088036 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 21611746 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21990379 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Schizophrenia | 22499536 | CNVD |
Schizophrenia | 18923514 | CNVD |
Neuroblastoma | 21124317 | CNVD |
Autism | 20970697 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Epilepsy | 20970697 | CNVD |
Schizophrenia | 22118685 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Addison''s disease | 21851588 | CNVD |
Heart disease | 22199024 | CNVD |
Mental retardation | 19951919 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Schizophrenia | 21399695 | CNVD |
Prostate cancer | 17217626 | CNVD |
Congenital heart defect | 22199024 | CNVD |
TAR Syndrome | 17847015 | CNVD |
Thrombocytopenia-absent radius syndrome | 17236129 | CNVD |
Autism | 18784092 | CNVD |
Congenital abnormalities | 18784092 | CNVD |
Mental retardation | 18784092 | CNVD |
Schizophrenia | 19855392 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Breast cancer | 16608533 | CNVD |
Ewing''s sarcoma | 22429812 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 19521722 | CNVD |
Mental retardation | 19521722 | CNVD |
Schizophrenia | 19521646 | CNVD |
Neuroblastoma | 19536264 | CNVD |
Epilepsy | 20923578 | CNVD |
Mental retardation | 17124404 | CNVD |
Schizophrenia | 19348701 | CNVD |
Schizophrenia | 18668039 | CNVD |
Schizophrenia | 19443537 | CNVD |
Schizophrenia | 19571808 | CNVD |
Velocardiofacial syndrome | 19329560 | CNVD |
Autism | 19955444 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Osteosarcoma | 19286668 | CNVD |
Osteosarcoma | 17242211 | CNVD |
Ovarian cancer | 17242211 | CNVD |
Ovine squamous-cell carcinoma | 17599052 | CNVD |
Schizophrenia | 18990708 | CNVD |
Sudden cardiac death | 19188705 | CNVD |
Plasma-cell dyscrasia | 16705089 | CNVD |
Myeloma | 17024118 | CNVD |
Cancer | 17060936 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Type 2 diabetes | 19141583 | CNVD |
Chordoma | 18071362 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17001317 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Breast cancer | 17142309 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Prostate cancer | 18632612 | CNVD |
Follicular lymphoma | 18703704 | CNVD |
Lung adenocarcinoma | 17982442 | CNVD |
Breast cancer | 21509527 | CNVD |
Williams Syndrome | 20824207 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Autism | 18522746 | CNVD |
Schizophrenia | 23813976 | CNVD |
Bladder cancer | 21909424 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Schizophrenia | 19197363 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Schizophrenia | 20967226 | CNVD |
Breast cancer | 22522925 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:144507200-144507600 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
2 | chr1:144507200-144507600 | Enhancers | Fetal Intestine Small | intestine |
3 | chr1:144507400-144507600 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |