Variant report

Variant	nsv94675
Chromosome Location	chr15:59164881-59174380
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:59171523..59173361-chr15:59197628..59200554,2	K562	blood:
2	chr15:59169081..59172963-chr15:59222560..59227013,5	K562	blood:
3	chr15:59167284..59169096-chr15:59170311..59173301,2	K562	blood:
4	chr15:59165302..59167186-chr15:59171743..59174191,2	MCF-7	breast:
5	chr15:59173863..59177301-chr15:59223266..59225843,3	K562	blood:
6	chr15:59167194..59169096-chr15:59170311..59172735,2	K562	blood:
7	chr15:59156007..59158196-chr15:59162780..59165304,2	K562	blood:
8	chr15:59171895..59174573-chr15:59176114..59178078,2	K562	blood:
9	chr15:59168045..59172125-chr15:59189388..59193241,4	K562	blood:
10	chr15:59165302..59167186-chr15:59171743..59174191,2	MCF-7	breast:
11	chr15:59166234..59168603-chr15:59169493..59172522,3	MCF-7	breast:
12	chr15:59169108..59171726-chr15:59174874..59180386,5	K562	blood:
13	chr15:59162668..59165557-chr15:59167625..59170277,3	K562	blood:
14	chr15:59169557..59171872-chr15:59175822..59177559,2	K562	blood:
15	chr15:59166234..59168603-chr15:59169493..59172522,3	MCF-7	breast:
16	chr15:59162668..59165557-chr15:59167625..59170277,3	K562	blood:
17	chr15:59167284..59169096-chr15:59170311..59173301,2	K562	blood:
18	chr15:59167194..59169096-chr15:59170311..59172735,2	K562	blood:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SLTM	hsa-miR-186-5p	chr15:59172081-59172102

Variant related genes	Relation type
ENSG00000137776	chromatin interactions
ENSG00000259738	chromatin interactions
ENSG00000259353	chromatin interactions
ENSG00000157450	chromatin interactions

Extended variants
information (count: 377 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:377 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564002873	chr15:59164901-59164902	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs576083011	chr15:59164902-59164903	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs572641301	chr15:59164907-59164908	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs537527738	chr15:59164919-59164920	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs557467940	chr15:59164929-59164930	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs561731676	chr15:59164969-59164970	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs528993087	chr15:59165017-59165018	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs571239314	chr15:59165033-59165034	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs180748678	chr15:59165070-59165071	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs559497767	chr15:59165159-59165160	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs533021865	chr15:59165173-59165174	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs538424209	chr15:59165177-59165178	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs79416131	chr15:59165239-59165240	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs148941907	chr15:59165278-59165279	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs537022103	chr15:59165279-59165280	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs548983312	chr15:59165344-59165345	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143652490	chr15:59165367-59165368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs138179719	chr15:59165385-59165386	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs34136385	chr15:59165403-59165404	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538767319	chr15:59165425-59165426	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539795174	chr15:59165426-59165427	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs535124206	chr15:59165432-59165433	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs371715172	chr15:59165447-59165448	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142858351	chr15:59165451-59165452	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539260924	chr15:59165463-59165464	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs559913210	chr15:59165512-59165513	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7179399	chr15:59165527-59165528	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs576021874	chr15:59165528-59165529	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542589233	chr15:59165542-59165543	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs368490131	chr15:59165622-59165623	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs145035266	chr15:59165766-59165767	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185261804	chr15:59165842-59165843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs541112999	chr15:59165888-59165889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs559218139	chr15:59165910-59165911	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs74844413	chr15:59165986-59165987	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs551184924	chr15:59165993-59165994	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs563210812	chr15:59165998-59165999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs530725514	chr15:59166015-59166016	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs188396963	chr15:59166016-59166017	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs138979920	chr15:59166017-59166018	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs562680138	chr15:59166023-59166024	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528509270	chr15:59166075-59166076	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs547046081	chr15:59166161-59166162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs571668675	chr15:59166196-59166197	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs539200933	chr15:59166224-59166225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557597519	chr15:59166290-59166291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs569524083	chr15:59166305-59166306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs536942238	chr15:59166350-59166351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555004336	chr15:59166382-59166383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573568153	chr15:59166409-59166410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Lung cancer	19238632	CNVD
Non-small cell lung cancer	19255323	CNVD
Non-small cell lung cancer	18509184	CNVD
head and neck squamous cell carcinoma	19318576	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:349 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:59145000-59166600	Weak transcription	HSMMtube	muscle
3	chr15:59147200-59169000	Weak transcription	K562	blood
4	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:59148000-59168600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:59148000-59169000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:59151200-59165400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:59154600-59170200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:59157200-59168600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:59157400-59168800	Weak transcription	Brain Angular Gyrus	brain
11	chr15:59157400-59170400	Weak transcription	Aorta	Aorta
12	chr15:59157600-59169000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:59157600-59169400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:59157600-59169400	Weak transcription	Brain Germinal Matrix	brain
15	chr15:59157600-59170200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:59157600-59170200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:59157600-59170200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:59157600-59170200	Weak transcription	Fetal Brain Female	brain
19	chr15:59157800-59169000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:59157800-59169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:59157800-59169400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:59157800-59170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:59157800-59170200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:59157800-59170200	Weak transcription	Primary T cells from cord blood	blood
25	chr15:59157800-59170400	Weak transcription	Primary B cells from cord blood	blood
26	chr15:59157800-59170400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:59157800-59172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:59158000-59165400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:59158000-59165600	Weak transcription	Fetal Muscle Leg	muscle
30	chr15:59158000-59167600	Weak transcription	Thymus	Thymus
31	chr15:59158000-59168400	Weak transcription	Gastric	stomach
32	chr15:59158000-59168400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:59158000-59168800	Weak transcription	Adipose Nuclei	Adipose
34	chr15:59158000-59169000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:59158000-59169000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:59158000-59169400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:59158000-59170000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:59158000-59170000	Weak transcription	Liver	Liver
39	chr15:59158000-59170000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:59158000-59170200	Weak transcription	Left Ventricle	heart
41	chr15:59158000-59170400	Weak transcription	Fetal Lung	lung
42	chr15:59158000-59170400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:59158000-59170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:59158000-59171800	Weak transcription	Right Ventricle	heart
45	chr15:59158200-59165000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:59158200-59168200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:59158200-59168200	Weak transcription	Fetal Thymus	thymus
48	chr15:59158200-59168400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:59158200-59168600	Weak transcription	Stomach Mucosa	stomach
50	chr15:59158200-59174600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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