Variant report

Variant	nsv947141
Chromosome Location	chr1:190911362-190920553
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557352216	chr1:190919011-190919012	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs192896595	chr1:190919031-190919032	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs184853876	chr1:190919121-190919122	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs10753960	chr1:190919126-190919127	Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs552966612	chr1:190919165-190919166	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs145069623	chr1:190919213-190919214	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs545087937	chr1:190919226-190919227	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs34965304	chr1:190919265-190919266	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs78930876	chr1:190919271-190919272	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs199497755	chr1:190919272-190919273	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs147320891	chr1:190919348-190919349	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs575320752	chr1:190919361-190919362	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs544441711	chr1:190919382-190919383	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs573171799	chr1:190919386-190919387	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs141047699	chr1:190919401-190919402	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs369997067	chr1:190919416-190919417	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs189178764	chr1:190919448-190919449	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs548015878	chr1:190919505-190919506	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs569729622	chr1:190919507-190919508	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs74723595	chr1:190919517-190919518	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs191301494	chr1:190919586-190919587	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs183531241	chr1:190919642-190919643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs537222205	chr1:190919647-190919648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs12128824	chr1:190919657-190919658	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs142388009	chr1:190919676-190919677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs60612018	chr1:190919706-190919707	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs137953886	chr1:190919723-190919724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs534602681	chr1:190919726-190919727	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs76980972	chr1:190919736-190919737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs553717257	chr1:190919738-190919739	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs566458535	chr1:190919755-190919756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs151303856	chr1:190919789-190919790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs575246149	chr1:190919799-190919800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs558681620	chr1:190919832-190919833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs189637288	chr1:190919847-190919848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs140846205	chr1:190919848-190919849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs543980508	chr1:190919853-190919854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs554701607	chr1:190919858-190919859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs574569833	chr1:190919864-190919865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs540103477	chr1:190919878-190919879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs560050512	chr1:190919915-190919916	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs114859117	chr1:190919922-190919923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs545050746	chr1:190919925-190919926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs565227008	chr1:190919928-190919929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs530996797	chr1:190919929-190919930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs140474671	chr1:190919932-190919933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs567811794	chr1:190919934-190919935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs370374660	chr1:190919975-190919976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs530350079	chr1:190919989-190919990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs75301215	chr1:190919994-190919995	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Lung adenocarcinoma	17086460	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	17086460	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190919000-190919200	Enhancers	Ovary	ovary
2	chr1:190919000-190919400	Active TSS	Colon Smooth Muscle	Colon
3	chr1:190919000-190919400	Active TSS	Stomach Smooth Muscle	stomach
4	chr1:190919000-190919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:190919000-190919800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:190919000-190920200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:190919200-190919600	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links