Variant report

Variant	nsv947636
Chromosome Location	chr10:58349767-58353338
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:58351002..58353905-chr5:28242920..28245430,2	MCF-7	breast:

Extended variants
information (count: 162 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187672243	chr10:58349783-58349784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148155098	chr10:58349792-58349793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs572633119	chr10:58349798-58349799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs17577793	chr10:58349886-58349887	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs376863251	chr10:58349897-58349898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192193166	chr10:58349910-58349911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562111746	chr10:58349940-58349941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553611041	chr10:58350057-58350058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544238404	chr10:58350067-58350068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184360122	chr10:58350127-58350128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532908512	chr10:58350164-58350165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545117223	chr10:58350195-58350196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs116521407	chr10:58350203-58350204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs527529270	chr10:58350207-58350208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs189556319	chr10:58350236-58350237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs141104350	chr10:58350239-58350240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs59408429	chr10:58350272-58350273	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs181823774	chr10:58350274-58350275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571642176	chr10:58350287-58350288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538738789	chr10:58350295-58350296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554278828	chr10:58350299-58350300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs566276747	chr10:58350304-58350305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368539835	chr10:58350306-58350307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs112418392	chr10:58350319-58350320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs189379337	chr10:58350330-58350331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574087757	chr10:58350384-58350385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs55818019	chr10:58350390-58350391	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs562961236	chr10:58350396-58350397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs55965686	chr10:58350415-58350416	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs61704964	chr10:58350457-58350458	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs375525381	chr10:58350470-58350471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs544773898	chr10:58350475-58350476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs60532981	chr10:58350480-58350481	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs74137824	chr10:58350497-58350498	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs542428455	chr10:58350533-58350534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs55985809	chr10:58350541-58350542	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs202035522	chr10:58350552-58350553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531480088	chr10:58350553-58350554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs57038393	chr10:58350555-58350556	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs565123051	chr10:58350565-58350566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532588087	chr10:58350566-58350567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12356331	chr10:58350575-58350576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs58499956	chr10:58350632-58350633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs60418230	chr10:58350633-58350634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs74137826	chr10:58350680-58350681	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs367680334	chr10:58350681-58350682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375069091	chr10:58350690-58350691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs72804912	chr10:58350714-58350715	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs536810835	chr10:58350761-58350762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149378935	chr10:58350764-58350765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58346400-58354000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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