Variant report

Variant	nsv947682
Chromosome Location	chr10:90835563-90839207
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:90835486..90838923-chr10:90846625..90848584,3	K562	blood:
2	chr10:90836807..90840202-chr10:90842627..90846044,3	K562	blood:
3	chr10:90837544..90840360-chr10:90843799..90846492,3	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12254883	chr10:90835570-90835571	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs150661757	chr10:90835587-90835588	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs2801540	chr10:90835692-90835693	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs184039072	chr10:90835719-90835720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs548091839	chr10:90835779-90835780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs566252380	chr10:90835820-90835821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs536879812	chr10:90835920-90835921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs555089515	chr10:90835923-90835924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540684321	chr10:90835971-90835972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs139918215	chr10:90836000-90836001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537547707	chr10:90836062-90836063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188756068	chr10:90836078-90836079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs80017486	chr10:90836101-90836102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs149408714	chr10:90836137-90836138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs59715906	chr10:90836205-90836206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs180776723	chr10:90836219-90836220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186211862	chr10:90836225-90836226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs144482120	chr10:90836316-90836317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541664123	chr10:90836383-90836384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs565685233	chr10:90836417-90836418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs190337463	chr10:90836423-90836424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2841014	chr10:90836480-90836481	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs376487493	chr10:90836486-90836487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2863223	chr10:90836530-90836531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs563897771	chr10:90836590-90836591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs72248170	chr10:90836593-90836594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200229815	chr10:90836602-90836603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74147176	chr10:90836603-90836604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182590648	chr10:90836611-90836612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs528117359	chr10:90836637-90836638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs563993584	chr10:90836646-90836647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529600305	chr10:90836647-90836648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs2841015	chr10:90836691-90836692	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs186266676	chr10:90836733-90836734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559645416	chr10:90836734-90836735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs372010810	chr10:90836735-90836736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs1937344	chr10:90836759-90836760	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs374094920	chr10:90836761-90836762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs374128061	chr10:90836770-90836771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs548751579	chr10:90836814-90836815	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs113186929	chr10:90836818-90836819	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs4934441	chr10:90836825-90836826	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs537117756	chr10:90836826-90836827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs200069233	chr10:90836858-90836859	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs75827390	chr10:90836870-90836871	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs190335941	chr10:90837012-90837013	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs374906083	chr10:90837015-90837016	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs535052409	chr10:90837017-90837018	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs552840487	chr10:90837047-90837048	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs11202961	chr10:90837061-90837062	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Bipolar disorder	19114987	CNVD
Melanoma	17363583	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90830400-90841800	Weak transcription	Left Ventricle	heart
2	chr10:90833800-90837400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:90833800-90838600	Weak transcription	K562	blood
4	chr10:90834200-90836800	Weak transcription	NHDF-Ad	bronchial
5	chr10:90834200-90837400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:90834200-90837400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:90834200-90837600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:90834400-90837000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:90834400-90837600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:90834400-90837800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:90834400-90838400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:90834400-90838600	Weak transcription	Osteobl	bone
13	chr10:90834400-90839800	Weak transcription	Adipose Nuclei	Adipose
14	chr10:90834800-90836600	Weak transcription	Ovary	ovary
15	chr10:90834800-90836800	Weak transcription	HUVEC	blood vessel
16	chr10:90834800-90838400	Weak transcription	GM12878-XiMat	blood
17	chr10:90835200-90835600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr10:90835200-90838600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:90835600-90839800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:90836800-90837000	Enhancers	Ovary	ovary
21	chr10:90836800-90837600	Enhancers	HUVEC	blood vessel
22	chr10:90836800-90840600	Enhancers	NHDF-Ad	bronchial
23	chr10:90837000-90838600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:90837200-90837600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:90837200-90837800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:90837400-90837600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:90837400-90837600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:90837400-90838200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:90837400-90839200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:90837400-90840600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:90837400-90843000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:90837600-90837800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:90837600-90838000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:90837600-90839200	Weak transcription	HUVEC	blood vessel
35	chr10:90837600-90840000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:90837600-90841000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:90837800-90838200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:90837800-90838200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:90837800-90839200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:90837800-90844000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:90838000-90840600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:90838200-90838600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:90838200-90838800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr10:90838200-90839400	Enhancers	Fetal Kidney	kidney
45	chr10:90838200-90840600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:90838200-90840800	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr10:90838400-90838800	Enhancers	HSMM	muscle
48	chr10:90838400-90839200	Enhancers	GM12878-XiMat	blood
49	chr10:90838400-90839600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:90838400-90840600	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links