Variant report

Variant	nsv947684
Chromosome Location	chr10:91566760-91569416
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:95 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139596676	chr10:91566778-91566779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs578037822	chr10:91566832-91566833	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs531715997	chr10:91566861-91566862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs10881677	chr10:91566961-91566962	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs112571582	chr10:91566970-91566971	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs561955155	chr10:91566973-91566974	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs560709151	chr10:91567120-91567121	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs527654353	chr10:91567180-91567181	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs541843424	chr10:91567225-91567226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs559872330	chr10:91567231-91567232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374691841	chr10:91567307-91567308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs181190774	chr10:91567341-91567342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184466756	chr10:91567364-91567365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550308210	chr10:91567407-91567408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570486804	chr10:91567418-91567419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575824473	chr10:91567530-91567531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189399526	chr10:91567546-91567547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs80035555	chr10:91567559-91567560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs566355459	chr10:91567609-91567610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs149743985	chr10:91567613-91567614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs555210732	chr10:91567634-91567635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182190201	chr10:91567639-91567640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566466037	chr10:91567648-91567649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs546520615	chr10:91567667-91567668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs1998646	chr10:91567696-91567697	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs573107648	chr10:91567712-91567713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs370394066	chr10:91567743-91567744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs560648113	chr10:91567780-91567781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs145584357	chr10:91567813-91567814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs543265410	chr10:91567855-91567856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs563149260	chr10:91567856-91567857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187268233	chr10:91567866-91567867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550540005	chr10:91567867-91567868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563970746	chr10:91567881-91567882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs117538195	chr10:91567910-91567911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376551619	chr10:91567921-91567922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566242949	chr10:91567924-91567925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs11594682	chr10:91567951-91567952	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs1998645	chr10:91567954-91567955	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs574562141	chr10:91567960-91567961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs1998644	chr10:91567961-91567962	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs553791322	chr10:91567964-91567965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370488039	chr10:91567965-91567966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs558131010	chr10:91567967-91567968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs571581468	chr10:91568052-91568053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs534272295	chr10:91568083-91568084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs112332849	chr10:91568095-91568096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs574184561	chr10:91568128-91568129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs12776628	chr10:91568130-91568131	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs76810496	chr10:91568169-91568170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91566000-91568600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:91566000-91569200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:91566400-91567200	Enhancers	Fetal Stomach	stomach
4	chr10:91567200-91568200	Weak transcription	Fetal Stomach	stomach
5	chr10:91568200-91568800	Enhancers	Fetal Stomach	stomach
6	chr10:91568600-91568800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:91568600-91569000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:91568600-91569000	Enhancers	GM12878-XiMat	blood
9	chr10:91568600-91569200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:91568800-91569000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:91568800-91569000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:91568800-91569800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:91569000-91573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:91569000-91573400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:91569000-91573400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:91569000-91573400	Weak transcription	GM12878-XiMat	blood
17	chr10:91569000-91574200	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:91569200-91569600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:91569200-91571200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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