Variant report

Variant	nsv947688
Chromosome Location	chr10:96450000-96454819
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 227 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:227 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535914063	chr10:96450035-96450036	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs540834533	chr10:96450042-96450043	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560629639	chr10:96450050-96450051	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528996943	chr10:96450110-96450111	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542680899	chr10:96450162-96450163	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs112021287	chr10:96450169-96450170	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
7	rs544122470	chr10:96450210-96450211	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551299666	chr10:96450218-96450219	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs571202375	chr10:96450240-96450241	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs141508262	chr10:96450247-96450248	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs563714936	chr10:96450248-96450249	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574215474	chr10:96450313-96450314	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs542743052	chr10:96450345-96450346	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191745224	chr10:96450346-96450347	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs184647859	chr10:96450350-96450351	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs540929068	chr10:96450353-96450354	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs555808649	chr10:96450369-96450370	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs569191192	chr10:96450437-96450438	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188965031	chr10:96450540-96450541	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182449158	chr10:96450573-96450574	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147041922	chr10:96450616-96450617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs187016705	chr10:96450644-96450645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs554430425	chr10:96450711-96450712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574157550	chr10:96450712-96450713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs199965881	chr10:96450732-96450733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542394935	chr10:96450733-96450734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562596738	chr10:96450758-96450759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189478913	chr10:96450761-96450762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544606297	chr10:96450773-96450774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564497588	chr10:96450807-96450808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs527596485	chr10:96450845-96450846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547259514	chr10:96450864-96450865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567376634	chr10:96450897-96450898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79344957	chr10:96450899-96450900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs76999039	chr10:96450900-96450901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs565162235	chr10:96450908-96450909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569337347	chr10:96450911-96450912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs76413136	chr10:96450914-96450915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375693078	chr10:96450926-96450927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181078752	chr10:96450944-96450945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs571643218	chr10:96450976-96450977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs185050907	chr10:96450992-96450993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554433962	chr10:96450993-96450994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574195766	chr10:96451006-96451007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111764383	chr10:96451009-96451010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs369147904	chr10:96451030-96451031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550890929	chr10:96451045-96451046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141326874	chr10:96451060-96451061	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
49	rs544667737	chr10:96451081-96451082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201633987	chr10:96451136-96451137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96447200-96504800	Weak transcription	Stomach Mucosa	stomach
2	chr10:96447800-96450000	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:96448000-96450200	Weak transcription	Small Intestine	intestine
4	chr10:96449200-96450000	ZNF genes & repeats	Liver	Liver
5	chr10:96449200-96450000	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr10:96449600-96450000	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr10:96449800-96455000	Weak transcription	Esophagus	oesophagus
8	chr10:96449800-96456400	Weak transcription	Gastric	stomach
9	chr10:96450000-96450600	Strong transcription	Liver	Liver
10	chr10:96450000-96453000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:96450000-96455200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:96450000-96471400	Weak transcription	Fetal Intestine Large	intestine
13	chr10:96450600-96453000	Weak transcription	Liver	Liver
14	chr10:96453000-96453400	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr10:96453000-96456200	Strong transcription	Liver	Liver
16	chr10:96453400-96455000	Weak transcription	Fetal Intestine Small	intestine

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