Variant report

Variant	nsv947689
Chromosome Location	chr10:96454819-96488738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96479612..96481874-chr10:96483604..96486212,2	MCF-7	breast:
2	chr10:96479612..96481874-chr10:96483604..96486212,2	MCF-7	breast:

Extended variants
information (count: 1467 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:1467 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149450201	chr10:96454819-96454820	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573172566	chr10:96454821-96454822	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs183285552	chr10:96454853-96454854	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560819565	chr10:96454876-96454877	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556017653	chr10:96454901-96454902	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs78455314	chr10:96454925-96454926	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372835223	chr10:96454941-96454942	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs12245364	chr10:96454960-96454961	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544824020	chr10:96454964-96454965	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12245470	chr10:96454966-96454967	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs186859571	chr10:96454969-96454970	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12778216	chr10:96454982-96454983	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs150735398	chr10:96455007-96455008	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs368906791	chr10:96455027-96455028	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs113297790	chr10:96455054-96455055	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs139104518	chr10:96455074-96455075	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs549053046	chr10:96455132-96455133	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs182691923	chr10:96455140-96455141	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs187345163	chr10:96455158-96455159	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs12253336	chr10:96455168-96455169	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs551174325	chr10:96455177-96455178	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs571078189	chr10:96455206-96455207	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76736308	chr10:96455212-96455213	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553419027	chr10:96455213-96455214	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs566794732	chr10:96455255-96455256	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs566687462	chr10:96455265-96455266	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555429513	chr10:96455307-96455308	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576018215	chr10:96455331-96455332	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs192901013	chr10:96455438-96455439	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558418459	chr10:96455440-96455441	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144776548	chr10:96455453-96455454	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539993919	chr10:96455454-96455455	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs111293871	chr10:96455525-96455526	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs532220865	chr10:96455526-96455527	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs185311909	chr10:96455530-96455531	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188582104	chr10:96455535-96455536	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531519890	chr10:96455540-96455541	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551537746	chr10:96455541-96455542	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7094365	chr10:96455563-96455564	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs58424017	chr10:96455566-96455567	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs193119152	chr10:96455615-96455616	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184567424	chr10:96455616-96455617	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546826886	chr10:96455625-96455626	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs145712520	chr10:96455679-96455680	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs554866462	chr10:96455693-96455694	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs117056102	chr10:96455700-96455701	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs7076520	chr10:96455738-96455739	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569248081	chr10:96455739-96455740	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538573382	chr10:96455755-96455756	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs372182296	chr10:96455767-96455768	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96447200-96504800	Weak transcription	Stomach Mucosa	stomach
2	chr10:96449800-96455000	Weak transcription	Esophagus	oesophagus
3	chr10:96449800-96456400	Weak transcription	Gastric	stomach
4	chr10:96450000-96455200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:96450000-96471400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:96453000-96456200	Strong transcription	Liver	Liver
7	chr10:96453400-96455000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:96455000-96455600	ZNF genes & repeats	Esophagus	oesophagus
9	chr10:96455000-96456600	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr10:96455200-96456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr10:96456200-96462800	Weak transcription	Liver	Liver
12	chr10:96456200-96463800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:96456600-96462800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:96462800-96463200	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr10:96462800-96469800	Strong transcription	Liver	Liver
16	chr10:96463200-96465200	Strong transcription	Fetal Intestine Small	intestine
17	chr10:96463800-96468000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:96464600-96466000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr10:96465000-96465600	Enhancers	Colonic Mucosa	Colon
20	chr10:96465200-96467000	Weak transcription	Fetal Intestine Small	intestine
21	chr10:96465400-96465800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr10:96466000-96466400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:96466400-96466800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr10:96467000-96467400	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr10:96467400-96469800	Weak transcription	Fetal Intestine Small	intestine
26	chr10:96468000-96477400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:96469800-96470000	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr10:96469800-96471000	Genic enhancers	Liver	Liver
29	chr10:96470000-96471200	Weak transcription	Fetal Intestine Small	intestine
30	chr10:96471000-96472600	Strong transcription	Liver	Liver
31	chr10:96471200-96472000	Strong transcription	Fetal Intestine Small	intestine
32	chr10:96471400-96471600	ZNF genes & repeats	Fetal Intestine Large	intestine
33	chr10:96472000-96474600	Weak transcription	Fetal Intestine Small	intestine
34	chr10:96472600-96476800	Weak transcription	Liver	Liver
35	chr10:96476800-96477400	Strong transcription	Liver	Liver
36	chr10:96477400-96478600	ZNF genes & repeats	Liver	Liver
37	chr10:96477400-96478600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
38	chr10:96477800-96489400	Weak transcription	Fetal Intestine Large	intestine
39	chr10:96478600-96479200	Weak transcription	Fetal Intestine Small	intestine
40	chr10:96478600-96484000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:96478600-96490800	Strong transcription	Liver	Liver
42	chr10:96479200-96480400	Strong transcription	Fetal Intestine Small	intestine
43	chr10:96480000-96482800	Weak transcription	Gastric	stomach
44	chr10:96480400-96487000	Weak transcription	Fetal Intestine Small	intestine
45	chr10:96484000-96484800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr10:96484800-96502600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:96487000-96487400	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr10:96487400-96500800	Weak transcription	Fetal Intestine Small	intestine

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