Variant report

Variant	nsv947690
Chromosome Location	chr10:96493203-96496057
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:123 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569980214	chr10:96493206-96493207	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs532620618	chr10:96493208-96493209	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372031069	chr10:96493213-96493214	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376594332	chr10:96493231-96493232	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528778149	chr10:96493235-96493236	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs199923206	chr10:96493237-96493238	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2281890	chr10:96493328-96493329	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs17110236	chr10:96493332-96493333	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs2281889	chr10:96493358-96493359	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs568335049	chr10:96493370-96493371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs182987359	chr10:96493397-96493398	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567572934	chr10:96493461-96493462	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556893424	chr10:96493463-96493464	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538158521	chr10:96493472-96493473	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113388617	chr10:96493487-96493488	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114866077	chr10:96493491-96493492	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374568526	chr10:96493502-96493503	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs545452816	chr10:96493513-96493514	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552653260	chr10:96493523-96493524	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572648759	chr10:96493572-96493573	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs140903394	chr10:96493599-96493600	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75445277	chr10:96493624-96493625	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530400708	chr10:96493652-96493653	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531252105	chr10:96493668-96493669	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543784162	chr10:96493676-96493677	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563637830	chr10:96493703-96493704	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199766290	chr10:96493704-96493705	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11188067	chr10:96493709-96493710	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs79219523	chr10:96493750-96493751	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
30	rs559881126	chr10:96493791-96493792	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs540052568	chr10:96493809-96493810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs528636187	chr10:96493925-96493926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548349235	chr10:96494011-96494012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111309889	chr10:96494021-96494022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs138415582	chr10:96494111-96494112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187508171	chr10:96494130-96494131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs570067429	chr10:96494163-96494164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs539044343	chr10:96494188-96494189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79361537	chr10:96494209-96494210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs117054827	chr10:96494245-96494246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs149269255	chr10:96494254-96494255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535228469	chr10:96494293-96494294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs147368145	chr10:96494298-96494299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574947537	chr10:96494368-96494369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370607691	chr10:96494374-96494375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs78133057	chr10:96494388-96494389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563972449	chr10:96494460-96494461	Enhancers Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs577656455	chr10:96494512-96494513	Enhancers Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs546209023	chr10:96494530-96494531	Enhancers Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs34699955	chr10:96494577-96494578	Enhancers Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96447200-96504800	Weak transcription	Stomach Mucosa	stomach
2	chr10:96484800-96502600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:96487400-96500800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:96492400-96493800	Enhancers	Liver	Liver
5	chr10:96493800-96494400	Weak transcription	Liver	Liver
6	chr10:96494400-96494800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:96494400-96494800	Enhancers	HMEC	breast
8	chr10:96494400-96495400	Genic enhancers	Liver	Liver
9	chr10:96495400-96497000	Weak transcription	Liver	Liver

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