Variant report

Variant	nsv947691
Chromosome Location	chr10:96903073-96920192
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDLIM1-2	chr10:96904028-96904175	ENSG00000231829.2
2	lnc-PDLIM1-2	chr10:96904028-96904175	XLOC_008910
3	lnc-CYP2C8-2	chr10:96918128-96918172	NONHSAT015747
4	lnc-PDLIM1-2	chr10:96904028-96904243	XLOC_008910

Extended variants
information (count: 191 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:191 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35555211	chr10:96903095-96903096	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs532451976	chr10:96903112-96903113	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs617848	chr10:96903156-96903157	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs559254480	chr10:96903162-96903163	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528388489	chr10:96903200-96903201	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573544957	chr10:96903205-96903206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568352288	chr10:96903222-96903223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs372380675	chr10:96903257-96903258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs202154984	chr10:96903286-96903287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs10628061	chr10:96903288-96903289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35959741	chr10:96903289-96903290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112899255	chr10:96903290-96903291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs77932114	chr10:96903301-96903302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550574361	chr10:96903315-96903316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570597223	chr10:96903319-96903320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs539128872	chr10:96903359-96903360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs559130903	chr10:96903399-96903400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188174170	chr10:96903412-96903413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200090630	chr10:96903469-96903470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs10537137	chr10:96903471-96903472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs58647156	chr10:96903472-96903473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs181449387	chr10:96903483-96903484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535339229	chr10:96903496-96903497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186488414	chr10:96903504-96903505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574768517	chr10:96903538-96903539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543444239	chr10:96903547-96903548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556901010	chr10:96903571-96903572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576945865	chr10:96903590-96903591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528414148	chr10:96903598-96903599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs559508231	chr10:96903610-96903611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs544792292	chr10:96903628-96903629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs573318666	chr10:96903649-96903650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs565048400	chr10:96903706-96903707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35730571	chr10:96903707-96903708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs397778326	chr10:96903711-96903712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376440894	chr10:96903712-96903713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373186655	chr10:96903731-96903732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561992459	chr10:96903751-96903752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530811038	chr10:96903777-96903778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs550613472	chr10:96903822-96903823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375308157	chr10:96903827-96903828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs373583953	chr10:96903829-96903830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140963175	chr10:96903857-96903858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533052963	chr10:96903883-96903884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs546340286	chr10:96903898-96903899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs61888014	chr10:96903925-96903926	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs534931304	chr10:96903998-96903999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs148029287	chr10:96904056-96904057	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs632113	chr10:96904057-96904058	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs568428181	chr10:96904065-96904066	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96890600-96904400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96893000-96903800	Weak transcription	Pancreas	Pancrea
3	chr10:96894000-96906600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:96896600-96904400	Weak transcription	Fetal Intestine Large	intestine
5	chr10:96901400-96903800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:96902600-96903200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:96903000-96904000	Weak transcription	Aorta	Aorta
8	chr10:96903200-96904600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:96918800-96923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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