Variant report

Variant	nsv947753
Chromosome Location	chr10:19340510-19341892
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf112-2	chr10:19340384-19340566	NONHSAT011658
2	lnc-C10orf112-2	chr10:19340885-19341099	NONHSAT011658

Extended variants
information (count: 79 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:79 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183809846	chr10:19340519-19340520	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
2	rs143897175	chr10:19340520-19340521	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
3	rs201012604	chr10:19340544-19340545	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
4	rs553619089	chr10:19340547-19340548	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
5	rs373722605	chr10:19340564-19340565	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs12775541	chr10:19340567-19340568	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs12775542	chr10:19340569-19340570	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs189204904	chr10:19340589-19340590	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs575642557	chr10:19340592-19340593	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs113977285	chr10:19340602-19340603	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs142136916	chr10:19340626-19340627	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs543607147	chr10:19340631-19340632	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs561845458	chr10:19340636-19340637	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs573791032	chr10:19340656-19340657	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs564582603	chr10:19340664-19340665	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs151192694	chr10:19340704-19340705	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs369538423	chr10:19340751-19340752	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs527637668	chr10:19340752-19340753	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs180849797	chr10:19340761-19340762	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs564406421	chr10:19340768-19340769	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs61852837	chr10:19340775-19340776	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs550088267	chr10:19340776-19340777	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs376507206	chr10:19340783-19340784	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs561892178	chr10:19340791-19340792	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs529160760	chr10:19340829-19340830	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs12781021	chr10:19340852-19340853	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs201670924	chr10:19340868-19340869	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs11008299	chr10:19340877-19340878	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs71387040	chr10:19340881-19340882	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs181709271	chr10:19340909-19340910	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
31	rs547466737	chr10:19340922-19340923	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
32	rs565637832	chr10:19340939-19340940	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
33	rs1934050	chr10:19340959-19340960	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs139313328	chr10:19340973-19340974	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs576375220	chr10:19340975-19340976	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs186157261	chr10:19340976-19340977	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs376021062	chr10:19340994-19340995	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs548645408	chr10:19341024-19341025	Weak transcription Active TSS Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
39	rs528931057	chr10:19341102-19341103	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs573778553	chr10:19341136-19341137	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs540874535	chr10:19341162-19341163	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs73591905	chr10:19341165-19341166	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs572465002	chr10:19341171-19341172	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs545766181	chr10:19341195-19341196	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs144124650	chr10:19341207-19341208	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs531628958	chr10:19341211-19341212	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs551155365	chr10:19341223-19341224	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs566249107	chr10:19341237-19341238	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs190536845	chr10:19341275-19341276	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs182697965	chr10:19341282-19341283	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19335400-19341400	Active TSS	Duodenum Mucosa	Duodenum
2	chr10:19338400-19341600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:19340400-19341400	Enhancers	Fetal Intestine Large	intestine
4	chr10:19340400-19342400	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr10:19341400-19341600	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr10:19341400-19342000	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr10:19341600-19341800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:19341600-19341800	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
9	chr10:19341600-19342000	Enhancers	Spleen	Spleen
10	chr10:19341800-19342000	Genic enhancers	Fetal Intestine Large	intestine
11	chr10:19341800-19342200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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