Variant report

Variant	nsv947783
Chromosome Location	chr10:27192486-27205875
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27200392..27202294-chr10:27208159..27210444,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDSS1-2	chr10:27195824-27196025	XLOC_008422
2	lnc-PDSS1-2	chr10:27198340-27198867	XLOC_008422

Extended variants
information (count: 422 )
Associated
traits (count: 46 )

Variant overlapped rSNPs/rCNVs (count:422 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77690932	chr10:27192489-27192490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs538059411	chr10:27192495-27192496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs559592501	chr10:27192500-27192501	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs554613767	chr10:27192502-27192503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs574457484	chr10:27192503-27192504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs7894384	chr10:27192504-27192505	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs545103328	chr10:27192513-27192514	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs2148114	chr10:27192534-27192535	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs191687970	chr10:27192543-27192544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs545329097	chr10:27192579-27192580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs7913977	chr10:27192629-27192630	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs35069993	chr10:27192631-27192632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs574264287	chr10:27192673-27192674	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs11015367	chr10:27192676-27192677	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs563056324	chr10:27192688-27192689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs7897673	chr10:27192690-27192691	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs183860626	chr10:27192709-27192710	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs7896796	chr10:27192764-27192765	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs7897834	chr10:27192845-27192846	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs146173361	chr10:27192926-27192927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189023023	chr10:27192955-27192956	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546740387	chr10:27192997-27192998	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs554469817	chr10:27193253-27193254	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs185748801	chr10:27193269-27193270	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs12411978	chr10:27193290-27193291	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs139422425	chr10:27193308-27193309	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs553337870	chr10:27193332-27193333	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs11015368	chr10:27193333-27193334	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs113517639	chr10:27193368-27193369	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs11015369	chr10:27193374-27193375	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs529097077	chr10:27193388-27193389	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs190161121	chr10:27193389-27193390	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs560528772	chr10:27194219-27194220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs145750424	chr10:27194237-27194238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs148947710	chr10:27194255-27194256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs145360370	chr10:27194274-27194275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs188917262	chr10:27194283-27194284	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs147656714	chr10:27194284-27194285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs142640755	chr10:27194300-27194301	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs527463225	chr10:27194310-27194311	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs560774958	chr10:27194341-27194342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs148360689	chr10:27194343-27194344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs539196050	chr10:27194352-27194353	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs545677384	chr10:27194359-27194360	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs12267918	chr10:27194406-27194407	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs12252797	chr10:27194419-27194420	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs554928884	chr10:27194424-27194425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs575086463	chr10:27194438-27194439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs540781618	chr10:27194441-27194442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs554452936	chr10:27194460-27194461	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:46)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21525872	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27192400-27193000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:27193200-27193400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:27194200-27195000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27194400-27194800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:27194600-27195000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:27195000-27196600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:27198600-27199000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27198600-27199400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:27198600-27199400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:27199000-27199400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:27199000-27199400	Enhancers	Osteobl	bone
12	chr10:27199200-27199400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:27199200-27199400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:27199400-27200800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:27199400-27203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:27200000-27201600	Enhancers	GM12878-XiMat	blood
17	chr10:27200600-27201400	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:27200800-27201600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:27201000-27201200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:27202400-27203200	Active TSS	Placenta	Placenta
21	chr10:27203200-27203400	Flanking Active TSS	Placenta	Placenta
22	chr10:27203600-27203800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:27203800-27204200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:27204200-27204600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links