Variant report

Variant	nsv947785
Chromosome Location	chr10:27240343-27246633
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 259 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:259 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191844594	chr10:27240450-27240451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs559095800	chr10:27240460-27240461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112453805	chr10:27240478-27240479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs531456090	chr10:27240481-27240482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201208018	chr10:27240488-27240489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183748285	chr10:27240489-27240490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs533418384	chr10:27240492-27240493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551635312	chr10:27240495-27240496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12764274	chr10:27240535-27240536	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs201199137	chr10:27240548-27240549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533895129	chr10:27240557-27240558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs145423595	chr10:27240605-27240606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs367757204	chr10:27240621-27240622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs74983689	chr10:27240631-27240632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570471063	chr10:27240632-27240633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs75210609	chr10:27240646-27240647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs187348939	chr10:27240649-27240650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs151000832	chr10:27240684-27240685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs80178951	chr10:27240698-27240699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs191807832	chr10:27240709-27240710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113689242	chr10:27240710-27240711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs12250172	chr10:27240716-27240717	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs35660544	chr10:27240718-27240719	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs35282679	chr10:27240723-27240724	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs372086646	chr10:27240761-27240762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs77888187	chr10:27240888-27240889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs78407004	chr10:27240890-27240891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs76233554	chr10:27240891-27240892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs574566680	chr10:27240903-27240904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs374608612	chr10:27240912-27240913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs377303924	chr10:27240919-27240920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111985421	chr10:27240924-27240925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371740326	chr10:27240925-27240926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs199539406	chr10:27240927-27240928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs369488994	chr10:27240939-27240940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200323334	chr10:27240953-27240954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs368869851	chr10:27241011-27241012	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs192082148	chr10:27241031-27241032	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200818705	chr10:27241041-27241042	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201345548	chr10:27241042-27241043	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs199678892	chr10:27241053-27241054	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74126901	chr10:27241075-27241076	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540333097	chr10:27241077-27241078	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546128354	chr10:27241078-27241079	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs184310441	chr10:27241090-27241091	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187089425	chr10:27241092-27241093	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34542566	chr10:27241124-27241125	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369408254	chr10:27241133-27241134	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs35117120	chr10:27241136-27241137	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs79127945	chr10:27241143-27241144	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21525872	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27239800-27240600	Weak transcription	Liver	Liver
2	chr10:27239800-27243000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:27241000-27241200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:27241000-27241200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:27241400-27244600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:27242800-27249200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:27243000-27243200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:27243000-27294800	Weak transcription	Liver	Liver
10	chr10:27243200-27243600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:27243600-27244000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:27244200-27249200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:27244400-27257200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:27244600-27248800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
16	chr10:27245200-27249400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:27245600-27255000	Weak transcription	Left Ventricle	heart
18	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
19	chr10:27245600-27270200	Weak transcription	Ovary	ovary
20	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
21	chr10:27246200-27251600	Weak transcription	Primary T cells from cord blood	blood
22	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links