Variant report

Variant	nsv947793
Chromosome Location	chr10:28318376-28326818
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28317069..28320040-chr10:28334616..28337378,2	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:122 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375181061	chr10:28323407-28323408	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs562724163	chr10:28323436-28323437	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs192580401	chr10:28323455-28323456	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs140991123	chr10:28323500-28323501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs560526117	chr10:28323587-28323588	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs527812616	chr10:28323610-28323611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546012829	chr10:28323659-28323660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549454306	chr10:28323702-28323703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs61406370	chr10:28323750-28323751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs74127187	chr10:28323775-28323776	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs112854508	chr10:28323798-28323799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs80074987	chr10:28323804-28323805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs373244263	chr10:28323810-28323811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs571574157	chr10:28323814-28323815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs143031191	chr10:28323815-28323816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139942420	chr10:28323816-28323817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550852376	chr10:28323817-28323818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201731149	chr10:28323819-28323820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs199985889	chr10:28323823-28323824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551118456	chr10:28323881-28323882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566459342	chr10:28323897-28323898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs72801842	chr10:28323944-28323945	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs2368287	chr10:28323964-28323965	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs377567049	chr10:28323988-28323989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs75712715	chr10:28324006-28324007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs538008408	chr10:28324011-28324012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs184766400	chr10:28324137-28324138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs57967009	chr10:28324142-28324143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs578025921	chr10:28324145-28324146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370146374	chr10:28324153-28324154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139535531	chr10:28324182-28324183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs545268822	chr10:28324274-28324275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543337705	chr10:28324306-28324307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs560333960	chr10:28324408-28324409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs572395637	chr10:28324428-28324429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542765073	chr10:28324512-28324513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs561001465	chr10:28324572-28324573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs563628737	chr10:28324588-28324589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs549995035	chr10:28324604-28324605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs565274039	chr10:28324617-28324618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565113843	chr10:28324625-28324626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2490061	chr10:28324643-28324644	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs149690550	chr10:28324654-28324655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs189118567	chr10:28324673-28324674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533731457	chr10:28324683-28324684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs202037018	chr10:28324731-28324732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs552442390	chr10:28324737-28324738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549119416	chr10:28324740-28324741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs76957567	chr10:28324794-28324795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs537925265	chr10:28324862-28324863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28323400-28323600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:28323400-28323600	ZNF genes & repeats	Aorta	Aorta
3	chr10:28323600-28325600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:28325200-28326200	Enhancers	NH-A	brain
5	chr10:28325400-28326200	Enhancers	Osteobl	bone
6	chr10:28325600-28326400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:28326400-28327000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:28326800-28327200	Enhancers	Fetal Stomach	stomach

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