Variant report

Variant	nsv947851
Chromosome Location	chr10:38017623-38021929
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73234355	chr10:38017637-38017638	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs111704109	chr10:38017638-38017639	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs532079591	chr10:38017673-38017674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs552375052	chr10:38017720-38017721	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113314626	chr10:38017738-38017739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs534954620	chr10:38017817-38017818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs186277476	chr10:38017835-38017836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs375039124	chr10:38017840-38017841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs191279852	chr10:38017841-38017842	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs76929774	chr10:38017846-38017847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs140980055	chr10:38017851-38017852	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs556248195	chr10:38017872-38017873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs576509732	chr10:38017931-38017932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs545157777	chr10:38017971-38017972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs182645882	chr10:38017973-38017974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs572302667	chr10:38017976-38017977	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs541183579	chr10:38017982-38017983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs561258384	chr10:38017983-38017984	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs7477411	chr10:38017985-38017986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs530297723	chr10:38017996-38017997	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs550902986	chr10:38017999-38018000	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs543429102	chr10:38018008-38018009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs34178309	chr10:38018032-38018033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs150115285	chr10:38018072-38018073	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs532266014	chr10:38018073-38018074	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs551975046	chr10:38018075-38018076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs186477144	chr10:38018134-38018135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs190933310	chr10:38018180-38018181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs548362735	chr10:38018187-38018188	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs568379407	chr10:38018191-38018192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs530940942	chr10:38020816-38020817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs551050696	chr10:38020824-38020825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs568288896	chr10:38020835-38020836	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs570810817	chr10:38020838-38020839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs141495493	chr10:38020873-38020874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs150853001	chr10:38020906-38020907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs567195962	chr10:38020910-38020911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs181059769	chr10:38020920-38020921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs139301707	chr10:38021246-38021247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs573625912	chr10:38021252-38021253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs67276704	chr10:38021269-38021270	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs77283234	chr10:38021270-38021271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs575597620	chr10:38021391-38021392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs544239952	chr10:38021408-38021409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs564588355	chr10:38021430-38021431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs533438128	chr10:38021431-38021432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs373443834	chr10:38021444-38021445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs376696419	chr10:38021459-38021460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs560655644	chr10:38021471-38021472	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs529602436	chr10:38021487-38021488	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38015400-38018000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:38016600-38018200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:38016800-38017800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:38017800-38018200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:38020800-38021000	Enhancers	A549	lung
6	chr10:38021200-38022600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:38021400-38022200	Enhancers	HSMM	muscle
8	chr10:38021400-38022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:38021400-38024400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:38021800-38022000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:38021800-38022000	Active TSS	A549	lung

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