Variant report

Variant	nsv947854
Chromosome Location	chr10:38357357-38359814
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:106 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529958528	chr10:38357363-38357364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs181467703	chr10:38357402-38357403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563002279	chr10:38357415-38357416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs151155442	chr10:38357417-38357418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs535263420	chr10:38357421-38357422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560787804	chr10:38357429-38357430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs529568466	chr10:38357446-38357447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs117560702	chr10:38357447-38357448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551721547	chr10:38357462-38357463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs571550633	chr10:38357488-38357489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370876929	chr10:38357529-38357530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs61742114	chr10:38357535-38357536	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs61742113	chr10:38357537-38357538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189592224	chr10:38357564-38357565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs117893875	chr10:38357580-38357581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs145197433	chr10:38357581-38357582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs71491231	chr10:38357615-38357616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs2504153	chr10:38357629-38357630	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs11011438	chr10:38357676-38357677	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs558482467	chr10:38357699-38357700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571956645	chr10:38357713-38357714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs677565	chr10:38357774-38357775	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs374559319	chr10:38357784-38357785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs527427101	chr10:38357824-38357825	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs554951308	chr10:38357826-38357827	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs574664937	chr10:38357840-38357841	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs372677310	chr10:38357841-38357842	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs543678620	chr10:38357856-38357857	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs146636506	chr10:38357860-38357861	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs12355086	chr10:38357897-38357898	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs531781846	chr10:38357952-38357953	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs550809438	chr10:38358013-38358014	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545178172	chr10:38358126-38358127	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs180782428	chr10:38358150-38358151	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs527730266	chr10:38358163-38358164	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs186584312	chr10:38358186-38358187	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs567653382	chr10:38358198-38358199	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs569046787	chr10:38358245-38358246	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530341529	chr10:38358247-38358248	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141392558	chr10:38358256-38358257	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs567132869	chr10:38358263-38358264	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs538687972	chr10:38358362-38358363	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549484146	chr10:38358453-38358454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs2472167	chr10:38358495-38358496	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs191005008	chr10:38358531-38358532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs534632845	chr10:38358542-38358543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs374971235	chr10:38358543-38358544	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs554890936	chr10:38358574-38358575	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs181803104	chr10:38358580-38358581	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs543740914	chr10:38358627-38358628	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Lung cancer	21569311	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38346200-38358200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:38347000-38358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:38350200-38358400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:38350600-38357800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:38350600-38358000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:38350600-38358000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:38350600-38364000	Weak transcription	Ovary	ovary
8	chr10:38351200-38357800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:38353200-38361400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:38357800-38358000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:38357800-38358000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:38358000-38358400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:38358000-38358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:38358000-38359400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:38358200-38358600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:38358200-38359000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:38358400-38358600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:38358400-38359600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:38359400-38359600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:38359600-38359800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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