Variant report

Variant	nsv947868
Chromosome Location	chr10:39029412-39044542
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 602 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:602 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191244524	chr10:39029809-39029810	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs571891317	chr10:39029815-39029816	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs527674394	chr10:39029817-39029818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs547769933	chr10:39029824-39029825	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs567687900	chr10:39029825-39029826	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs536712447	chr10:39029834-39029835	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs189831975	chr10:39029846-39029847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs376650339	chr10:39029848-39029849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs182336201	chr10:39029864-39029865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs186949812	chr10:39029865-39029866	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs10450353	chr10:39029878-39029879	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs200796667	chr10:39029879-39029880	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs538505588	chr10:39029880-39029881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs558805691	chr10:39029901-39029902	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs202064048	chr10:39029902-39029903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75696421	chr10:39029911-39029912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs572207374	chr10:39029925-39029926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs573686931	chr10:39029974-39029975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs191768380	chr10:39029975-39029976	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs9664506	chr10:39029987-39029988	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs574110317	chr10:39029988-39029989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs372983372	chr10:39029989-39029990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs543097291	chr10:39029992-39029993	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs563265957	chr10:39030005-39030006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs531928806	chr10:39030006-39030007	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs545315641	chr10:39030025-39030026	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs34514117	chr10:39030057-39030058	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs548129003	chr10:39030062-39030063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs556312601	chr10:39030067-39030068	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs530147222	chr10:39030075-39030076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs576161642	chr10:39030114-39030115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs570092996	chr10:39030133-39030134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs12256543	chr10:39030136-39030137	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs184887120	chr10:39030165-39030166	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs565560065	chr10:39030168-39030169	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs534569474	chr10:39030172-39030173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs12253710	chr10:39030173-39030174	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs543096235	chr10:39030208-39030209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs557006539	chr10:39030215-39030216	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs200100415	chr10:39030216-39030217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs12772118	chr10:39030219-39030220	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs565304602	chr10:39030243-39030244	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs527924861	chr10:39030244-39030245	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs373018501	chr10:39030274-39030275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs561616151	chr10:39030385-39030386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs12772505	chr10:39030386-39030387	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs549868434	chr10:39030420-39030421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs560076683	chr10:39030421-39030422	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs563704209	chr10:39030438-39030439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs532472641	chr10:39030440-39030441	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39029800-39031600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:39029800-39033800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:39034400-39035800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:39034400-39036000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:39034600-39036000	ZNF genes & repeats	Pancreas	Pancrea

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