Variant report

Variant	nsv947872
Chromosome Location	chr10:42603321-42605063
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 160 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:160 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549389098	chr10:42603328-42603329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs187351390	chr10:42603336-42603337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376309051	chr10:42603344-42603345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs4500439	chr10:42603349-42603350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558050553	chr10:42603367-42603368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571859941	chr10:42603388-42603389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs35154868	chr10:42603396-42603397	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs201839905	chr10:42603397-42603398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs554188628	chr10:42603405-42603406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574201637	chr10:42603423-42603424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs543006980	chr10:42603426-42603427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs556628169	chr10:42603428-42603429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184543681	chr10:42603435-42603436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs199947204	chr10:42603452-42603453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs189323713	chr10:42603462-42603463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201656080	chr10:42603471-42603472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs78849907	chr10:42603476-42603477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs564922523	chr10:42603493-42603494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527441317	chr10:42603495-42603496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs540872333	chr10:42603505-42603506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs202235464	chr10:42603507-42603508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561010710	chr10:42603523-42603524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200017541	chr10:42603537-42603538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs529757178	chr10:42603551-42603552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201147079	chr10:42603558-42603559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs191179285	chr10:42603560-42603561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs184546272	chr10:42603583-42603584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77268832	chr10:42603615-42603616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181223548	chr10:42603638-42603639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs571848121	chr10:42603647-42603648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs534372288	chr10:42603650-42603651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547686763	chr10:42603652-42603653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186531117	chr10:42603660-42603661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200350368	chr10:42603661-42603662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536770983	chr10:42603688-42603689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs189039702	chr10:42603693-42603694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71299632	chr10:42603705-42603706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375307035	chr10:42603706-42603707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs540852843	chr10:42603719-42603720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71503917	chr10:42603732-42603733	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs538664690	chr10:42603736-42603737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs186291567	chr10:42603749-42603750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572273167	chr10:42603771-42603772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201837595	chr10:42603782-42603783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543351095	chr10:42603784-42603785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191096026	chr10:42603787-42603788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs560785191	chr10:42603799-42603800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184038166	chr10:42603813-42603814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543162512	chr10:42603815-42603816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs377178984	chr10:42603822-42603823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	20531469	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42600200-42606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42602200-42605800	Weak transcription	Monocytes-CD14+_RO01746	blood

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