Variant report

Variant	nsv947905
Chromosome Location	chr10:45667450-45669900
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF22-2	chr10:45669864-45670078	NONHSAT013084
2	lnc-ZNF22-2	chr10:45667983-45668080	NONHSAT013084
3	lnc-ZNF22-2	chr10:45669864-45670078	NONHSAT013085
4	lnc-ZNF22-2	chr10:45667983-45668080	NONHSAT013085

Extended variants
information (count: 73 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538338290	chr10:45667491-45667492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs56244069	chr10:45667569-45667570	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs568448232	chr10:45667574-45667575	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs190357422	chr10:45667579-45667580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs569973428	chr10:45667613-45667614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs554818141	chr10:45667626-45667627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs572966876	chr10:45667752-45667753	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs192812416	chr10:45667772-45667773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs558375043	chr10:45667778-45667779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs576577849	chr10:45667792-45667793	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs184244838	chr10:45667912-45667913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs562180888	chr10:45667919-45667920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs189992056	chr10:45668068-45668069	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs372412950	chr10:45668069-45668070	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs117192297	chr10:45668081-45668082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs112085146	chr10:45668155-45668156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs560805876	chr10:45668159-45668160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs4948953	chr10:45668203-45668204	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs138309910	chr10:45668238-45668239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs4948954	chr10:45668241-45668242	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs544643568	chr10:45668271-45668272	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs113088433	chr10:45668281-45668282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs550273586	chr10:45668339-45668340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs377674236	chr10:45668360-45668361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs72782477	chr10:45668375-45668376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs535813053	chr10:45668397-45668398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs141909373	chr10:45668418-45668419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs183880096	chr10:45668483-45668484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs541272024	chr10:45668503-45668504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs533844014	chr10:45668548-45668549	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs376168745	chr10:45668580-45668581	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs188955720	chr10:45668660-45668661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs150609157	chr10:45668711-45668712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371828960	chr10:45668737-45668738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537578101	chr10:45668777-45668778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529439946	chr10:45668785-45668786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs555811779	chr10:45668821-45668822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs574112436	chr10:45668868-45668869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs549523185	chr10:45668880-45668881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541769921	chr10:45668910-45668911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs2311316	chr10:45668913-45668914	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs531743509	chr10:45668939-45668940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572737658	chr10:45668953-45668954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs551443312	chr10:45668956-45668957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs539059180	chr10:45668964-45668965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181399603	chr10:45668967-45668968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs1856592	chr10:45668973-45668974	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs187640863	chr10:45669002-45669003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550311478	chr10:45669003-45669004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs191950254	chr10:45669030-45669031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Glioblastoma multiforme	21138945	CNVD
Autism	19287141	CNVD
Intellectual disability	21948486	CNVD
Glioblastoma multiforme	21525872	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45667400-45668600	Enhancers	Fetal Heart	heart
2	chr10:45668600-45671200	Weak transcription	Fetal Heart	heart

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