Variant report

Variant	nsv947906
Chromosome Location	chr10:45669900-45671966
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF22-2	chr10:45669864-45670078	NONHSAT013085
2	lnc-ZNF22-2	chr10:45669864-45670078	NONHSAT013084

Extended variants
information (count: 73 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529430382	chr10:45669910-45669911	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs541154350	chr10:45669913-45669914	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs189704419	chr10:45669979-45669980	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs533146629	chr10:45669987-45669988	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs552069900	chr10:45669997-45669998	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs370043903	chr10:45670010-45670011	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs570373764	chr10:45670011-45670012	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs532946112	chr10:45670016-45670017	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs531406416	chr10:45670031-45670032	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs549604138	chr10:45670034-45670035	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs568145884	chr10:45670079-45670080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs36046529	chr10:45670122-45670123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535565596	chr10:45670181-45670182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs553557658	chr10:45670274-45670275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182744256	chr10:45670305-45670306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201664880	chr10:45670338-45670339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs72642113	chr10:45670447-45670448	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs7910939	chr10:45670463-45670464	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs7911066	chr10:45670541-45670542	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs186985632	chr10:45670552-45670553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113439716	chr10:45670626-45670627	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs12571900	chr10:45670628-45670629	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs574132531	chr10:45670694-45670695	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs183034664	chr10:45670716-45670717	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs559554571	chr10:45670768-45670769	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs536419540	chr10:45670794-45670795	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs375266130	chr10:45670839-45670840	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs544955530	chr10:45670852-45670853	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs563331974	chr10:45670862-45670863	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs531533210	chr10:45670866-45670867	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs549642707	chr10:45670899-45670900	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs568268548	chr10:45670900-45670901	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs7091078	chr10:45670937-45670938	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs556239095	chr10:45670987-45670988	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs12258556	chr10:45671008-45671009	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs576013638	chr10:45671025-45671026	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs193075775	chr10:45671090-45671091	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs565591412	chr10:45671114-45671115	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs539534825	chr10:45671123-45671124	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs4948658	chr10:45671134-45671135	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs569656001	chr10:45671142-45671143	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs571450549	chr10:45671205-45671206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs374821091	chr10:45671224-45671225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs185551938	chr10:45671234-45671235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs565828505	chr10:45671254-45671255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs574192406	chr10:45671278-45671279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs534865427	chr10:45671294-45671295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs558263182	chr10:45671302-45671303	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs553437288	chr10:45671310-45671311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs578072874	chr10:45671312-45671313	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Glioblastoma multiforme	21138945	CNVD
Autism	19287141	CNVD
Intellectual disability	21948486	CNVD
Glioblastoma multiforme	21525872	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45668600-45671200	Weak transcription	Fetal Heart	heart
2	chr10:45670200-45670600	Weak transcription	K562	blood
3	chr10:45670600-45670800	Enhancers	K562	blood
4	chr10:45670800-45671200	Flanking Active TSS	K562	blood
5	chr10:45670800-45671600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:45670800-45671600	Enhancers	Placenta	Placenta
7	chr10:45671200-45671400	Enhancers	K562	blood
8	chr10:45671200-45672600	Enhancers	Fetal Heart	heart
9	chr10:45671400-45671800	Flanking Active TSS	K562	blood
10	chr10:45671600-45676200	Weak transcription	Placenta	Placenta
11	chr10:45671600-45676400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:45671800-45673000	Enhancers	K562	blood

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