Variant report

Variant	nsv947910
Chromosome Location	chr10:46116371-46119704
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:46117972-46118163	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:45969349..45971136-chr10:46118293..46119945,2	MCF-7	breast:
2	chr10:46116813..46119458-chr10:46124945..46127326,2	MCF-7	breast:
3	chr10:46119155..46121505-chr10:46123417..46125347,2	K562	blood:
4	chr10:46111949..46114220-chr10:46117450..46120210,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCH8-2	chr10:46116228-46116375	NONHSAT013109

No data

Variant related genes	Relation type
ZFAND4	TF binding region

Extended variants
information (count: 124 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:124 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562084938	chr10:46116439-46116440	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs529369027	chr10:46116463-46116464	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186956198	chr10:46116510-46116511	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140518809	chr10:46116521-46116522	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs566090093	chr10:46116553-46116554	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs533564285	chr10:46116568-46116569	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs551694752	chr10:46116580-46116581	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs569970163	chr10:46116583-46116584	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370639832	chr10:46116584-46116585	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs192216515	chr10:46116628-46116629	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs548536119	chr10:46116639-46116640	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs185158249	chr10:46116718-46116719	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574523997	chr10:46116741-46116742	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560084820	chr10:46116783-46116784	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs190809548	chr10:46116789-46116790	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs553028859	chr10:46116790-46116791	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs150401266	chr10:46116841-46116842	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537785392	chr10:46116870-46116871	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538785340	chr10:46116904-46116905	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374437699	chr10:46116910-46116911	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs557193879	chr10:46116915-46116916	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112687846	chr10:46116954-46116955	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542069044	chr10:46116966-46116967	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113802947	chr10:46116976-46116977	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
25	rs185508959	chr10:46117006-46117007	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs188378935	chr10:46117007-46117008	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs374509491	chr10:46117068-46117069	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111460152	chr10:46117078-46117079	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
29	rs540398843	chr10:46117079-46117080	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs550635449	chr10:46117091-46117092	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs367552134	chr10:46117098-46117099	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559760877	chr10:46117144-46117145	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375825268	chr10:46117153-46117154	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551924499	chr10:46117175-46117176	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs180798052	chr10:46117244-46117245	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540835017	chr10:46117252-46117253	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531045325	chr10:46117267-46117268	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560227318	chr10:46117272-46117273	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185804312	chr10:46117287-46117288	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs534601357	chr10:46117365-46117366	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546287086	chr10:46117368-46117369	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs571272706	chr10:46117374-46117375	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs371866911	chr10:46117387-46117388	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565190676	chr10:46117393-46117394	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs557155227	chr10:46117500-46117501	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570140683	chr10:46117503-46117504	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs73292815	chr10:46117530-46117531	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs7074524	chr10:46117543-46117544	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs554897082	chr10:46117549-46117550	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573065545	chr10:46117636-46117637	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Glioblastoma multiforme	21138945	CNVD
Autism	19287141	CNVD
Intellectual disability	21948486	CNVD
Glioblastoma multiforme	21525872	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD
Acute myeloid leukemia	19651601	CNVD
Breast cancer	20409316	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Rett syndrome	21593744	CNVD
Glioblastoma multiforme	22286061	CNVD
Neuroblastoma	21899760	CNVD
Intellectual disability	22045946	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:46096200-46142000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:46096400-46121600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:46096400-46121800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:46097800-46121600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:46097800-46121800	Weak transcription	Psoas Muscle	Psoas
7	chr10:46098200-46153400	Weak transcription	HSMM	muscle
8	chr10:46099200-46122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:46099400-46119400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:46100200-46142600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:46101600-46121800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:46102600-46119400	Weak transcription	GM12878-XiMat	blood
13	chr10:46103000-46121800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:46103000-46121800	Weak transcription	Spleen	Spleen
15	chr10:46103400-46130600	Weak transcription	Fetal Brain Male	brain
16	chr10:46103400-46142200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:46103600-46121800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:46103600-46132600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:46103800-46121400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:46103800-46134600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:46104400-46151400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:46104800-46121400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:46105000-46121800	Weak transcription	Pancreas	Pancrea
24	chr10:46105600-46141600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:46105800-46123800	Weak transcription	NHEK	skin
26	chr10:46106400-46121600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:46106400-46137000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:46106400-46141400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:46106400-46142000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:46106800-46128000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr10:46106800-46142000	Weak transcription	Fetal Kidney	kidney
32	chr10:46106800-46146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:46107000-46125600	Weak transcription	Fetal Brain Female	brain
34	chr10:46107200-46119200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:46107800-46121800	Weak transcription	Gastric	stomach
36	chr10:46107800-46141800	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:46107800-46142000	Weak transcription	Esophagus	oesophagus
38	chr10:46108000-46121600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:46108000-46121800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:46108000-46155800	Weak transcription	Brain Angular Gyrus	brain
41	chr10:46108200-46142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:46108400-46121000	Weak transcription	Primary B cells from cord blood	blood
43	chr10:46108400-46121400	Weak transcription	Thymus	Thymus
44	chr10:46108400-46121800	Weak transcription	Left Ventricle	heart
45	chr10:46108400-46121800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:46108400-46121800	Weak transcription	Right Ventricle	heart
47	chr10:46108400-46122000	Weak transcription	Ovary	ovary
48	chr10:46108400-46122800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:46108400-46123000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:46108400-46142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links