Variant report

Variant	nsv948022
Chromosome Location	chr10:57509685-57544937
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535316248	chr10:57527852-57527853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs555384222	chr10:57527853-57527854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs111573828	chr10:57527857-57527858	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs386744070	chr10:57527858-57527859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs200706066	chr10:57527859-57527860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs61853876	chr10:57527866-57527867	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187379218	chr10:57527900-57527901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs116926594	chr10:57527912-57527913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557958953	chr10:57527919-57527920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11005010	chr10:57527943-57527944	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs192277774	chr10:57527955-57527956	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs34041388	chr10:57527985-57527986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs543584802	chr10:57528028-57528029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs7914431	chr10:57528050-57528051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs4385798	chr10:57528059-57528060	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs147171128	chr10:57528107-57528108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs562262137	chr10:57528118-57528119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs373121568	chr10:57528162-57528163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs572573626	chr10:57528171-57528172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs144207802	chr10:57528241-57528242	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs564378488	chr10:57528244-57528245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537135051	chr10:57528252-57528253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs533246816	chr10:57528259-57528260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs10825606	chr10:57528263-57528264	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs142197900	chr10:57528323-57528324	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs374498872	chr10:57528328-57528329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs563299350	chr10:57528353-57528354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs10825607	chr10:57528364-57528365	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs549231427	chr10:57528366-57528367	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57527800-57528400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:57528000-57528400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:57528000-57528400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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