Variant report

Variant	nsv948023
Chromosome Location	chr10:57549072-57570724
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 516 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:516 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533166102	chr10:57556840-57556841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs530070061	chr10:57556864-57556865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs546687515	chr10:57556876-57556877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs566381891	chr10:57556889-57556890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs551572707	chr10:57556901-57556902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs376984073	chr10:57556903-57556904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs74679557	chr10:57556928-57556929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs551939127	chr10:57556971-57556972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs184254696	chr10:57556991-57556992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11005028	chr10:57557004-57557005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs568741417	chr10:57557016-57557017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs537667027	chr10:57557017-57557018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs537375062	chr10:57557049-57557050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs554617793	chr10:57557050-57557051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs568075086	chr10:57557067-57557068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs533737698	chr10:57557074-57557075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs189603329	chr10:57557097-57557098	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs573566596	chr10:57557099-57557100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs9415357	chr10:57557126-57557127	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs559171179	chr10:57557185-57557186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs375141979	chr10:57557240-57557241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs143230586	chr10:57557269-57557270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs181153407	chr10:57557274-57557275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs561393521	chr10:57557297-57557298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs574839022	chr10:57557300-57557301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs567710073	chr10:57557354-57557355	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs200239673	chr10:57557391-57557392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs371630700	chr10:57557425-57557426	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs540617532	chr10:57557427-57557428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs185954651	chr10:57557430-57557431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs532253528	chr10:57557455-57557456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs552025185	chr10:57557473-57557474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs562458351	chr10:57557518-57557519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs72024137	chr10:57557534-57557535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs189050197	chr10:57557566-57557567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs548090130	chr10:57557590-57557591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs181486484	chr10:57557596-57557597	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs186434485	chr10:57557598-57557599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs1916488	chr10:57557624-57557625	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs571048993	chr10:57557650-57557651	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs551485068	chr10:57557654-57557655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs141385865	chr10:57557658-57557659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539975017	chr10:57557698-57557699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs1916487	chr10:57557708-57557709	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs575856925	chr10:57557716-57557717	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs1916486	chr10:57557717-57557718	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs1916485	chr10:57557721-57557722	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs1916484	chr10:57557743-57557744	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs114224520	chr10:57557873-57557874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs141084467	chr10:57557941-57557942	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Cancer	20164919	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57556800-57557800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:57557000-57557200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:57557000-57557800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:57557200-57558000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:57557800-57558000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:57559400-57559600	Enhancers	Fetal Brain Male	brain
7	chr10:57559600-57560400	Weak transcription	Fetal Brain Male	brain
8	chr10:57559800-57560200	Enhancers	Liver	Liver
9	chr10:57560200-57560600	Flanking Active TSS	Liver	Liver
10	chr10:57560200-57560800	Enhancers	Fetal Brain Female	brain
11	chr10:57560400-57561200	Enhancers	Fetal Brain Male	brain
12	chr10:57560600-57561200	Active TSS	Liver	Liver
13	chr10:57561200-57562000	Enhancers	Liver	Liver
14	chr10:57561200-57570200	Weak transcription	Fetal Brain Male	brain
15	chr10:57570200-57570400	Enhancers	Fetal Brain Male	brain

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