Variant report

Variant	nsv948129
Chromosome Location	chr10:90377936-90378681
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNLS-2	chr10:90377980-90378691	NONHSAT015476

Extended variants
information (count: 27 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569453564	chr10:90377966-90377967	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs528445804	chr10:90377967-90377968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs202127805	chr10:90377975-90377976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs113218415	chr10:90377983-90377984	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs369830462	chr10:90378006-90378007	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs550277588	chr10:90378008-90378009	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs191151217	chr10:90378086-90378087	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs544198497	chr10:90378111-90378112	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs376145215	chr10:90378132-90378133	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs562606529	chr10:90378134-90378135	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs386746323	chr10:90378203-90378204	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs7917696	chr10:90378205-90378206	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs568718023	chr10:90378270-90378271	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs369251753	chr10:90378279-90378280	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs545271495	chr10:90378313-90378314	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs568924450	chr10:90378344-90378345	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs539745312	chr10:90378393-90378394	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs557748397	chr10:90378395-90378396	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs117122397	chr10:90378421-90378422	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs74727997	chr10:90378462-90378463	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs200342373	chr10:90378470-90378471	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs114004554	chr10:90378550-90378551	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs17113316	chr10:90378627-90378628	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs543929170	chr10:90378650-90378651	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs111815389	chr10:90378655-90378656	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs575721010	chr10:90378662-90378663	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs546504245	chr10:90378664-90378665	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Melanoma	17363583	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90376200-90378800	Enhancers	Adipose Nuclei	Adipose
2	chr10:90376800-90378800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:90377400-90378800	Enhancers	Liver	Liver
4	chr10:90378000-90378600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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