Variant report

Variant	nsv948145
Chromosome Location	chr10:96534293-96535266
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:96534991-96535093	GM20000	blood:	n/a	n/a
2	POLR2A	chr10:96535019-96535071	A549	lung:	n/a	n/a

Variant related genes	Relation type
MTND4P19	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:85 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376881880	chr10:96534297-96534298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs57881044	chr10:96534299-96534300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192307840	chr10:96534306-96534307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553415821	chr10:96534307-96534308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541035683	chr10:96534324-96534325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145010573	chr10:96534330-96534331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs573414411	chr10:96534340-96534341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543194409	chr10:96534358-96534359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs545728374	chr10:96534412-96534413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs118116031	chr10:96534419-96534420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs531973003	chr10:96534421-96534422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545701623	chr10:96534454-96534455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs17884832	chr10:96534475-96534476	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs527656081	chr10:96534556-96534557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542051693	chr10:96534575-96534576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs7916649	chr10:96534584-96534585	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs111773794	chr10:96534588-96534589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs17878937	chr10:96534597-96534598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs567611862	chr10:96534607-96534608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs373045306	chr10:96534609-96534610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs530199203	chr10:96534621-96534622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs150938675	chr10:96534628-96534629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569491215	chr10:96534649-96534650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs140775444	chr10:96534712-96534713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543880335	chr10:96534720-96534721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560620268	chr10:96534725-96534726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558396143	chr10:96534735-96534736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs17878649	chr10:96534768-96534769	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs368928532	chr10:96534792-96534793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149702989	chr10:96534801-96534802	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375151331	chr10:96534812-96534813	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs150045105	chr10:96534836-96534837	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs202036394	chr10:96534839-96534840	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs554542134	chr10:96534856-96534857	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs145328984	chr10:96534863-96534864	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201306972	chr10:96534864-96534865	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs28399505	chr10:96534867-96534868	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs149072229	chr10:96534887-96534888	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs143075956	chr10:96534911-96534912	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs118203756	chr10:96534917-96534918	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs17878459	chr10:96534922-96534923	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs375159521	chr10:96534938-96534939	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372985779	chr10:96534951-96534952	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545642100	chr10:96534963-96534964	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200347843	chr10:96534972-96534973	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112197069	chr10:96534975-96534976	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs5030781	chr10:96534979-96534980	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs199549982	chr10:96534993-96534994	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs369969271	chr10:96535008-96535009	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs370652887	chr10:96535021-96535022	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oligozoospermia	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96525600-96539400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:96526800-96534800	Weak transcription	Fetal Intestine Large	intestine
3	chr10:96530400-96537600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:96531600-96535000	Weak transcription	Liver	Liver
5	chr10:96533000-96564600	Weak transcription	Gastric	stomach
6	chr10:96534800-96535800	Strong transcription	Fetal Intestine Large	intestine
7	chr10:96535000-96537800	Strong transcription	Liver	Liver

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