Variant report

Variant	nsv948150
Chromosome Location	chr10:98284174-98285297
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98277034..98279925-chr10:98283412..98287381,4	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571544927	chr10:98284197-98284198	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs112915574	chr10:98284259-98284260	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs375559945	chr10:98284273-98284274	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs187667608	chr10:98284283-98284284	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs76531860	chr10:98284335-98284336	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs536304798	chr10:98284341-98284342	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs576756352	chr10:98284355-98284356	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs555068739	chr10:98284372-98284373	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs541175847	chr10:98284393-98284394	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575343015	chr10:98284402-98284403	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs573320952	chr10:98284448-98284449	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs75137848	chr10:98284471-98284472	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs201470693	chr10:98284489-98284490	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs565162752	chr10:98284534-98284535	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs577114779	chr10:98284606-98284607	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs191000865	chr10:98284619-98284620	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs374998516	chr10:98284682-98284683	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs12416646	chr10:98284805-98284806	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs34392266	chr10:98284829-98284830	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs575094888	chr10:98284866-98284867	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs11593147	chr10:98284879-98284880	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546815217	chr10:98284882-98284883	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs10509711	chr10:98284894-98284895	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs139723327	chr10:98284927-98284928	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs550899078	chr10:98285066-98285067	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs569132083	chr10:98285067-98285068	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs536667423	chr10:98285086-98285087	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs112448988	chr10:98285100-98285101	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs183248151	chr10:98285104-98285105	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs534070770	chr10:98285188-98285189	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs558713735	chr10:98285201-98285202	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs573239364	chr10:98285210-98285211	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs1156036	chr10:98285219-98285220	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs544455376	chr10:98285245-98285246	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs186803016	chr10:98285249-98285250	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs146166600	chr10:98285252-98285253	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs542587022	chr10:98285280-98285281	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:169 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274000-98285800	Weak transcription	Aorta	Aorta
2	chr10:98274200-98284600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:98274200-98285400	Weak transcription	Colonic Mucosa	Colon
4	chr10:98274200-98285600	Weak transcription	Gastric	stomach
5	chr10:98274200-98285600	Weak transcription	Left Ventricle	heart
6	chr10:98274200-98285600	Weak transcription	Lung	lung
7	chr10:98274200-98285600	Weak transcription	Ovary	ovary
8	chr10:98274200-98285600	Weak transcription	Right Ventricle	heart
9	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
13	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:98274400-98285000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:98274400-98285000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:98274400-98285000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:98274400-98285600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:98274400-98285600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:98274400-98285600	Weak transcription	Spleen	Spleen
20	chr10:98274400-98285800	Weak transcription	Brain Substantia Nigra	brain
21	chr10:98274400-98286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:98274400-98287200	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:98274400-98287200	Weak transcription	K562	blood
24	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:98275000-98285000	Weak transcription	HSMMtube	muscle
27	chr10:98275200-98285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:98275400-98289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
31	chr10:98276200-98285200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:98276400-98285600	Weak transcription	Esophagus	oesophagus
33	chr10:98276400-98289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:98276600-98285000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:98276800-98285400	Weak transcription	Thymus	Thymus
39	chr10:98277200-98285600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:98277200-98286000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:98277400-98285400	Weak transcription	Psoas Muscle	Psoas
43	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:98277800-98289200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:98277800-98293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:98278000-98293200	Strong transcription	Liver	Liver
50	chr10:98278000-98293400	Strong transcription	Duodenum Mucosa	Duodenum

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