Variant report

Variant	nsv948242
Chromosome Location	chr10:19401696-19428561
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:19419930..19422122-chr10:19424808..19427231,2	K562	blood:
2	chr10:19424011..19426061-chr10:19435541..19437655,2	K562	blood:
3	chr10:19419930..19422122-chr10:19424808..19427231,2	K562	blood:

Extended variants
information (count: 1229 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:1229 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191767274	chr10:19401696-19401697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs146169212	chr10:19401704-19401705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs528819638	chr10:19401753-19401754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114363236	chr10:19401774-19401775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559386186	chr10:19401796-19401797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs116253937	chr10:19401802-19401803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs10826956	chr10:19401803-19401804	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs2583649	chr10:19401823-19401824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs569857558	chr10:19401831-19401832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs373476747	chr10:19401887-19401888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183853103	chr10:19401920-19401921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542690859	chr10:19401937-19401938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550262986	chr10:19401998-19401999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs541888806	chr10:19402002-19402003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188281046	chr10:19402010-19402011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs180755979	chr10:19402011-19402012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs112900717	chr10:19402015-19402016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs547858232	chr10:19402043-19402044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs566233187	chr10:19402122-19402123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs540154864	chr10:19402137-19402138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs74120727	chr10:19402143-19402144	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs557006043	chr10:19402146-19402147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552885931	chr10:19402147-19402148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs77043944	chr10:19402167-19402168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs537257388	chr10:19402197-19402198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs554998681	chr10:19402226-19402227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs573451569	chr10:19402240-19402241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561019646	chr10:19402265-19402266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs114976715	chr10:19402275-19402276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs144697308	chr10:19402292-19402293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs7084304	chr10:19402303-19402304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147907252	chr10:19402362-19402363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs577835600	chr10:19402364-19402365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs187397605	chr10:19402378-19402379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs563448195	chr10:19402395-19402396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs374162385	chr10:19402403-19402404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549203481	chr10:19402467-19402468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs4537658	chr10:19402501-19402502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs115976012	chr10:19402515-19402516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs4606374	chr10:19402519-19402520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566037540	chr10:19402522-19402523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs142894207	chr10:19402551-19402552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs146109564	chr10:19402557-19402558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs570255011	chr10:19402586-19402587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs140131162	chr10:19402618-19402619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs118131033	chr10:19402654-19402655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs146310858	chr10:19402748-19402749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573384211	chr10:19402749-19402750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs28657856	chr10:19402750-19402751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12218566	chr10:19402752-19402753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19398800-19403200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19399400-19403200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19401600-19403200	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19403200-19404000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr10:19403200-19404400	Strong transcription	Fetal Intestine Small	intestine
6	chr10:19403200-19404800	Strong transcription	Fetal Intestine Large	intestine
7	chr10:19404000-19412800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:19404400-19411200	Weak transcription	Fetal Intestine Small	intestine
9	chr10:19404800-19410400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:19407000-19408200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr10:19407200-19409000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:19407400-19409000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:19407400-19409400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:19407600-19407800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:19407600-19409000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:19407800-19408000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr10:19407800-19408000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr10:19407800-19409000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr10:19407800-19409000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr10:19408000-19408200	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr10:19408000-19408200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr10:19408000-19408400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:19408000-19408600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:19408200-19408600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:19408200-19409200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:19408200-19409200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr10:19408600-19408800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr10:19408600-19409000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:19408600-19409200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr10:19408800-19409200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:19409000-19409400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:19409200-19410400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:19410400-19413600	Strong transcription	Fetal Intestine Large	intestine
34	chr10:19410800-19411000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr10:19410800-19411000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:19411200-19413600	Strong transcription	Fetal Intestine Small	intestine
37	chr10:19412800-19413400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr10:19413400-19415800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:19413600-19417200	Weak transcription	Fetal Intestine Large	intestine
40	chr10:19413600-19424000	Weak transcription	Fetal Intestine Small	intestine
41	chr10:19414800-19434800	Weak transcription	Small Intestine	intestine
42	chr10:19415800-19419400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr10:19417200-19419400	Strong transcription	Fetal Intestine Large	intestine
44	chr10:19419400-19422800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:19419400-19425600	Weak transcription	Fetal Intestine Large	intestine
46	chr10:19422600-19423200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr10:19422600-19423400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr10:19422800-19423600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:19422800-19423600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:19423000-19423200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links