Variant report

Variant	nsv948244
Chromosome Location	chr10:19445908-19446774
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531499354	chr10:19445958-19445959	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs550148637	chr10:19445965-19445966	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs568242983	chr10:19445983-19445984	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs116413905	chr10:19445984-19445985	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549550351	chr10:19445985-19445986	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs148765775	chr10:19446041-19446042	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs547626236	chr10:19446044-19446045	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373815576	chr10:19446048-19446049	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10827002	chr10:19446074-19446075	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs143759525	chr10:19446106-19446107	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs558637845	chr10:19446117-19446118	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs74118806	chr10:19446140-19446141	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs75489999	chr10:19446150-19446151	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538146190	chr10:19446156-19446157	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs142591915	chr10:19446176-19446177	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368959676	chr10:19446201-19446202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574808660	chr10:19446210-19446211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs58095583	chr10:19446216-19446217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs535625976	chr10:19446223-19446224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs567802282	chr10:19446260-19446261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs572007136	chr10:19446263-19446264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs571208464	chr10:19446312-19446313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs182909694	chr10:19446335-19446336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs187281934	chr10:19446365-19446366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553460576	chr10:19446378-19446379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573356173	chr10:19446384-19446385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs543728446	chr10:19446390-19446391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs112607251	chr10:19446392-19446393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs137873494	chr10:19446414-19446415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547227602	chr10:19446450-19446451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538510643	chr10:19446458-19446459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559507919	chr10:19446462-19446463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143404807	chr10:19446465-19446466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs550035038	chr10:19446466-19446467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570735231	chr10:19446468-19446469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs537814487	chr10:19446491-19446492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549786184	chr10:19446505-19446506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs138438858	chr10:19446517-19446518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554061129	chr10:19446518-19446519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs539335887	chr10:19446562-19446563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369696786	chr10:19446573-19446574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542065911	chr10:19446593-19446594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs149273220	chr10:19446599-19446600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561938072	chr10:19446621-19446622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12783745	chr10:19446660-19446661	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs543176907	chr10:19446692-19446693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs573943013	chr10:19446715-19446716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12781273	chr10:19446742-19446743	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19442400-19446200	Strong transcription	Fetal Intestine Large	intestine
3	chr10:19443400-19446000	Strong transcription	Duodenum Mucosa	Duodenum
4	chr10:19446000-19450600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:19446200-19446800	Weak transcription	Fetal Intestine Large	intestine

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