Variant report

Variant	nsv948245
Chromosome Location	chr10:19455151-19457311
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151110399	chr10:19455160-19455161	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs576523125	chr10:19455166-19455167	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544344550	chr10:19455227-19455228	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs368026072	chr10:19455279-19455280	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs374021401	chr10:19455282-19455283	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs562322997	chr10:19455289-19455290	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564527009	chr10:19455302-19455303	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs574097578	chr10:19455325-19455326	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574409351	chr10:19455341-19455342	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs11008746	chr10:19455383-19455384	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs11008747	chr10:19455394-19455395	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs538222012	chr10:19455405-19455406	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs568282964	chr10:19455414-19455415	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141122700	chr10:19455431-19455432	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs12779217	chr10:19455464-19455465	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs552390807	chr10:19455466-19455467	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564319260	chr10:19455555-19455556	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs532630385	chr10:19455556-19455557	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs112427133	chr10:19455557-19455558	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551085340	chr10:19455578-19455579	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs79956473	chr10:19455589-19455590	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs192374243	chr10:19455609-19455610	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs185290239	chr10:19455618-19455619	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs116288060	chr10:19455638-19455639	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534264521	chr10:19455651-19455652	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs72790790	chr10:19455666-19455667	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568829350	chr10:19455703-19455704	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs558725847	chr10:19455711-19455712	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570742477	chr10:19455731-19455732	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs143983463	chr10:19455746-19455747	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs111348487	chr10:19455750-19455751	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377263457	chr10:19455844-19455845	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556189937	chr10:19455874-19455875	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs539003491	chr10:19455886-19455887	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs557332418	chr10:19455891-19455892	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529395416	chr10:19455935-19455936	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs541763781	chr10:19455953-19455954	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs553842280	chr10:19455971-19455972	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572597625	chr10:19455986-19455987	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs572366909	chr10:19456047-19456048	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546147326	chr10:19456059-19456060	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201964869	chr10:19456060-19456061	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs564257872	chr10:19456070-19456071	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs531496326	chr10:19456105-19456106	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543272112	chr10:19456114-19456115	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188244537	chr10:19456118-19456119	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs530144223	chr10:19456124-19456125	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548555551	chr10:19456132-19456133	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs566575451	chr10:19456164-19456165	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144696874	chr10:19456203-19456204	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19454600-19457600	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:19454600-19457600	Strong transcription	Fetal Intestine Large	intestine

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