Variant report

Variant	nsv948246
Chromosome Location	chr10:19462519-19465184
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:98 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12245038	chr10:19462545-19462546	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs10827012	chr10:19462576-19462577	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs562657737	chr10:19462607-19462608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs551402609	chr10:19462608-19462609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs548182267	chr10:19462680-19462681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs139906281	chr10:19462683-19462684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs369161419	chr10:19462713-19462714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528018022	chr10:19462757-19462758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs552736140	chr10:19462771-19462772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs375850661	chr10:19462783-19462784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs142213161	chr10:19462792-19462793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs372523537	chr10:19462793-19462794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577389369	chr10:19462810-19462811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186005891	chr10:19462862-19462863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs190403547	chr10:19462872-19462873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371043223	chr10:19462886-19462887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568162090	chr10:19462913-19462914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs182692432	chr10:19463081-19463082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538194093	chr10:19463191-19463192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs77048842	chr10:19463192-19463193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539378499	chr10:19463227-19463228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557918076	chr10:19463288-19463289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs146389403	chr10:19463315-19463316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543624549	chr10:19463318-19463319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs562597215	chr10:19463319-19463320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553018814	chr10:19463332-19463333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187932818	chr10:19463356-19463357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs6481773	chr10:19463367-19463368	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs192827521	chr10:19463422-19463423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs140031809	chr10:19463471-19463472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs370542910	chr10:19463472-19463473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11008778	chr10:19463474-19463475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs139775900	chr10:19463491-19463492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs182586514	chr10:19463554-19463555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373431644	chr10:19463568-19463569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113423188	chr10:19463582-19463583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371443713	chr10:19463586-19463587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs564820432	chr10:19463659-19463660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527636381	chr10:19463703-19463704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs74118821	chr10:19463728-19463729	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs12243483	chr10:19463733-19463734	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs76705876	chr10:19463750-19463751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12243541	chr10:19463820-19463821	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs377451302	chr10:19463827-19463828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs148419108	chr10:19463843-19463844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375720541	chr10:19463855-19463856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187757450	chr10:19463864-19463865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs142573639	chr10:19463872-19463873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs193113583	chr10:19463948-19463949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs536806300	chr10:19463950-19463951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19457600-19475800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19458200-19465800	Weak transcription	Fetal Intestine Large	intestine

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