Variant report

Variant	nsv948247
Chromosome Location	chr10:19464583-19465184
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533557059	chr10:19464586-19464587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs80185302	chr10:19464611-19464612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs12354920	chr10:19464657-19464658	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs558175991	chr10:19464703-19464704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs35432267	chr10:19464711-19464712	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs544159755	chr10:19464720-19464721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562382162	chr10:19464725-19464726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs34724539	chr10:19464735-19464736	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs541646745	chr10:19464773-19464774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs559143739	chr10:19464789-19464790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs16918317	chr10:19464829-19464830	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs551087712	chr10:19464846-19464847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12357517	chr10:19464875-19464876	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs12359056	chr10:19464882-19464883	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs548833323	chr10:19464982-19464983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs79611951	chr10:19464989-19464990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189262432	chr10:19464998-19464999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs59991176	chr10:19465053-19465054	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs192122803	chr10:19465104-19465105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12359081	chr10:19465140-19465141	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19457600-19475800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19458200-19465800	Weak transcription	Fetal Intestine Large	intestine

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