Variant report

Variant	nsv948259
Chromosome Location	chr10:38700103-38709294
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:38705080-38705230	HMF	breast:	n/a	n/a
2	CTCF	chr10:38705040-38705190	GM12864	blood:	n/a	n/a
3	CTCF	chr10:38705100-38705250	GM12878	blood:	n/a	n/a
4	CTCF	chr10:38705100-38705250	GM12875	blood:	n/a	n/a
5	CTCF	chr10:38705000-38705150	HPAF	blood vessel:	n/a	n/a
6	CTCF	chr10:38705133-38705217	MCF-7	breast:	n/a	n/a
7	CTCF	chr10:38705040-38705190	GM12871	blood:	n/a	n/a
8	CTCF	chr10:38705040-38705190	A549	lung:	n/a	n/a
9	CTCF	chr10:38705080-38705230	GM12872	blood:	n/a	n/a
10	CTCF	chr10:38705140-38705173	GM19238	blood:	n/a	n/a
11	CTCF	chr10:38705080-38705230	GM12869	blood:	n/a	n/a
12	CTCF	chr10:38705060-38705210	HBMEC	blood vessel:	n/a	n/a
13	CTCF	chr10:38705145-38705198	MCF-7	breast:	n/a	n/a
14	CTCF	chr10:38705136-38705221	MCF-7	breast:	n/a	n/a
15	CTCF	chr10:38705040-38705190	MCF-7	breast:	n/a	n/a
16	CTCF	chr10:38705100-38705250	HEK293	kidney:	n/a	n/a
17	CTCF	chr10:38705135-38705209	MCF-7	breast:	n/a	n/a
18	CTCF	chr10:38705035-38705083	LNCaP	prostate:	n/a	n/a
19	CTCF	chr10:38705080-38705230	GM12874	blood:	n/a	n/a
20	FOXA1	chr10:38708693-38709071	HepG2	liver:	n/a	n/a
21	JUND	chr10:38702267-38702478	HepG2	liver:	n/a	n/a
22	SP1	chr10:38708777-38709079	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-3	chr10:38701156-38701371	ENSG00000225119.2
2	lnc-ZNF37A-3	chr10:38702255-38702320	ENSG00000225119.2
3	lnc-ZNF37A-3	chr10:38704472-38704530	ENSG00000225119.2
4	lnc-ZNF37A-3	chr10:38701657-38701810	ENSG00000225119.2
5	lnc-ZNF37A-3	chr10:38705610-38706132	ENSG00000225119.2

No data

Variant related genes	Relation type
RNU6-1118P	TF binding region

Extended variants
information (count: 289 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:289 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563175836	chr10:38700178-38700179	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs576298596	chr10:38700185-38700186	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs9732107	chr10:38700234-38700235	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs544394667	chr10:38700372-38700373	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs565093080	chr10:38700424-38700425	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527385186	chr10:38700431-38700432	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs9730745	chr10:38700452-38700453	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs560761771	chr10:38700507-38700508	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529675956	chr10:38700514-38700515	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs71010425	chr10:38700548-38700549	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs191135867	chr10:38700589-38700590	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569983259	chr10:38700604-38700605	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs9340242	chr10:38700620-38700621	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs11011558	chr10:38700625-38700626	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs184769151	chr10:38700712-38700713	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534333371	chr10:38700770-38700771	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554227246	chr10:38700774-38700775	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9340243	chr10:38700776-38700777	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs536669693	chr10:38700851-38700852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs556247950	chr10:38700859-38700860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs111732402	chr10:38700904-38700905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs576335337	chr10:38700978-38700979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs189232609	chr10:38701017-38701018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558772851	chr10:38701021-38701022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572296221	chr10:38701039-38701040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs17595355	chr10:38701057-38701058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561014759	chr10:38701138-38701139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs529721482	chr10:38701167-38701168	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs543416621	chr10:38701182-38701183	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs112699035	chr10:38701223-38701224	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs563227943	chr10:38701289-38701290	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs537984507	chr10:38701327-38701328	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs76518938	chr10:38701356-38701357	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs565918781	chr10:38701404-38701405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs528269795	chr10:38701427-38701428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9340245	chr10:38701445-38701446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs567762527	chr10:38701465-38701466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536306686	chr10:38701523-38701524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556521524	chr10:38701545-38701546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs186925165	chr10:38701561-38701562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs17595369	chr10:38701670-38701671	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs11516818	chr10:38701676-38701677	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs572333053	chr10:38701693-38701694	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs181378913	chr10:38701709-38701710	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs182122557	chr10:38701716-38701717	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs554826640	chr10:38701758-38701759	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs574479458	chr10:38701759-38701760	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs9340247	chr10:38701781-38701782	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs189910866	chr10:38701824-38701825	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs200199086	chr10:38701840-38701841	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Lung cancer	21569311	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38692200-38741000	Weak transcription	Aorta	Aorta
2	chr10:38692400-38739600	Weak transcription	Gastric	stomach
3	chr10:38692600-38716400	Weak transcription	Primary T cells from cord blood	blood
4	chr10:38692600-38736800	Weak transcription	Pancreas	Pancrea
5	chr10:38692600-38737200	Weak transcription	Esophagus	oesophagus
6	chr10:38692800-38700200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:38692800-38701800	Weak transcription	Fetal Intestine Small	intestine
8	chr10:38692800-38703200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:38692800-38709200	Weak transcription	Adipose Nuclei	Adipose
10	chr10:38692800-38714600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:38692800-38728800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:38692800-38736800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:38692800-38736800	Weak transcription	Brain Anterior Caudate	brain
14	chr10:38692800-38736800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:38692800-38737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:38692800-38737200	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:38692800-38737400	Weak transcription	Fetal Intestine Large	intestine
18	chr10:38692800-38737600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:38692800-38741200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:38693000-38700200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:38693000-38714000	Weak transcription	Right Ventricle	heart
22	chr10:38693000-38716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:38693000-38736800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:38693000-38737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:38693000-38737200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:38693000-38737200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:38693000-38737200	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:38693000-38737400	Weak transcription	Placenta	Placenta
29	chr10:38693000-38739200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:38697200-38700600	Strong transcription	Liver	Liver
31	chr10:38698600-38700200	Weak transcription	Spleen	Spleen
32	chr10:38698600-38706000	Weak transcription	Ovary	ovary
33	chr10:38698600-38713800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:38698600-38738800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:38698800-38729600	Weak transcription	Left Ventricle	heart
36	chr10:38698800-38736800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:38698800-38736800	Weak transcription	Lung	lung
38	chr10:38699800-38700600	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:38699800-38700800	Strong transcription	Fetal Stomach	stomach
40	chr10:38700000-38711000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:38700200-38700800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:38700200-38739600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:38700600-38704600	Weak transcription	Liver	Liver
44	chr10:38700600-38736800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:38700600-38736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:38700800-38715000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:38700800-38737200	Weak transcription	Fetal Stomach	stomach
48	chr10:38701800-38703000	Strong transcription	Fetal Intestine Small	intestine
49	chr10:38703000-38736800	Weak transcription	Fetal Intestine Small	intestine
50	chr10:38703600-38713400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links