Variant report

Variant	nsv948268
Chromosome Location	chr10:38930889-38937348
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-16	chr10:38929039-38931213	NONHSAT012834
2	lnc-SEPT7L-2	chr10:38933913-38934317	ENSG00000233867
3	lnc-SEPT7L-2	chr10:38934082-38934317	ENSG00000233867
4	lnc-SEPT7L-2	chr10:38934102-38934317	NONHSAT012835

Extended variants
information (count: 63 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199583908	chr10:38930892-38930893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs562452642	chr10:38930896-38930897	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs530802747	chr10:38930902-38930903	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs550962768	chr10:38930910-38930911	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs200221680	chr10:38930925-38930926	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs11596963	chr10:38930947-38930948	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs201739793	chr10:38930951-38930952	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs2954847	chr10:38930967-38930968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs57456683	chr10:38930979-38930980	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs142649473	chr10:38930982-38930983	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs553589808	chr10:38930988-38930989	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs367851143	chr10:38931000-38931001	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs188267088	chr10:38931002-38931003	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs2983935	chr10:38931025-38931026	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs181013356	chr10:38931028-38931029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs549000569	chr10:38931030-38931031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs148079670	chr10:38931034-38931035	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs116055990	chr10:38931038-38931039	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs557334133	chr10:38931055-38931056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs369946353	chr10:38931061-38931062	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs185634105	chr10:38931116-38931117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs150631256	chr10:38931119-38931120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs61842018	chr10:38931125-38931126	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs573355019	chr10:38931151-38931152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs61842019	chr10:38931153-38931154	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs542451491	chr10:38931156-38931157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs555745448	chr10:38931169-38931170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs575899855	chr10:38931182-38931183	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs544254684	chr10:38931186-38931187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs564490948	chr10:38931194-38931195	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs533403117	chr10:38931209-38931210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs540706503	chr10:38931211-38931212	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs61842027	chr10:38933917-38933918	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs4881611	chr10:38933959-38933960	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs4442468	chr10:38933971-38933972	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs551963263	chr10:38933986-38933987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs4272728	chr10:38934016-38934017	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs538696700	chr10:38934018-38934019	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs142451835	chr10:38934053-38934054	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs558620459	chr10:38934074-38934075	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs7893509	chr10:38934081-38934082	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs565842197	chr10:38934085-38934086	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs534766112	chr10:38934098-38934099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs554487923	chr10:38934146-38934147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs10870454	chr10:38934158-38934159	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs543335502	chr10:38934165-38934166	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs557320432	chr10:38934167-38934168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs576903769	chr10:38934174-38934175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs545856058	chr10:38934185-38934186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs4272729	chr10:38934217-38934218	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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