Variant report

Variant	nsv948269
Chromosome Location	chr10:38937348-38943949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-2	chr10:38943366-38943515	ENSG00000233867
2	lnc-SEPT7L-2	chr10:38939444-38939552	ENSG00000233867
3	lnc-SEPT7L-2	chr10:38938424-38938559	ENSG00000233867
4	lnc-SEPT7L-2	chr10:38943366-38943515	NONHSAT012835
5	lnc-SEPT7L-2	chr10:38939444-38939552	ENSG00000233867
6	lnc-SEPT7L-2	chr10:38943366-38943409	ENSG00000233867
7	lnc-SEPT7L-2	chr10:38938424-38938559	NONHSAT012835
8	lnc-SEPT7L-2	chr10:38939444-38939552	NONHSAT012835
9	lnc-SEPT7L-2	chr10:38938424-38938559	ENSG00000233867
10	lnc-SEPT7L-2	chr10:38939444-38939552	ENSG00000233867
11	lnc-SEPT7L-2	chr10:38937626-38937724	ENSG00000233867
12	lnc-SEPT7L-2	chr10:38943366-38943515	ENSG00000233867

No data

Extended variants
information (count: 45 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541375119	chr10:38937627-38937628	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182138036	chr10:38937629-38937630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs185490882	chr10:38937631-38937632	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs530341179	chr10:38937638-38937639	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs550094362	chr10:38937644-38937645	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs190738658	chr10:38937646-38937647	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs532583859	chr10:38937663-38937664	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs552383678	chr10:38937698-38937699	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs566176806	chr10:38937703-38937704	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs180753455	chr10:38937710-38937711	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs185363499	chr10:38937723-38937724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs535118621	chr10:38938425-38938426	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs199747655	chr10:38938438-38938439	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs567146638	chr10:38938439-38938440	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs2208484	chr10:38938452-38938453	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs568617572	chr10:38938459-38938460	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs537221152	chr10:38938475-38938476	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs4070337	chr10:38938479-38938480	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs200676928	chr10:38938481-38938482	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs540104628	chr10:38938482-38938483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs373285173	chr10:38938488-38938489	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs573181165	chr10:38938498-38938499	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs201520351	chr10:38938510-38938511	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs199987369	chr10:38938522-38938523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs201101738	chr10:38938541-38938542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs142016242	chr10:38939448-38939449	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs369450660	chr10:38939463-38939464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs11146888	chr10:38939464-38939465	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs544682620	chr10:38939482-38939483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs564958810	chr10:38939486-38939487	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs4436477	chr10:38939503-38939504	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs527380333	chr10:38939507-38939508	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs4333952	chr10:38939523-38939524	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs4474366	chr10:38939542-38939543	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs560698879	chr10:38943367-38943368	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs4070324	chr10:38943386-38943387	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs529589362	chr10:38943388-38943389	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs549697376	chr10:38943400-38943401	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs4070323	chr10:38943410-38943411	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs193081628	chr10:38943440-38943441	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs3878084	chr10:38943455-38943456	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
42	rs375332982	chr10:38943474-38943475	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs551539561	chr10:38943482-38943483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs111885785	chr10:38943485-38943486	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs201519002	chr10:38943504-38943505	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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