Variant report

Variant	nsv948270
Chromosome Location	chr10:38944550-38965946
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38965666..38966167-chr6:29670107..29670640,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-2	chr10:38965036-38965210	ENSG00000233867
2	lnc-SEPT7L-2	chr10:38965036-38965210	ENSG00000233867
3	lnc-SEPT7L-2	chr10:38944936-38945056	ENSG00000233867
4	lnc-SEPT7L-2	chr10:38965036-38965210	NONHSAT012835

Extended variants
information (count: 31 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10870456	chr10:38944939-38944940	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs534974064	chr10:38944963-38944964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs554973328	chr10:38944969-38944970	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs574728864	chr10:38944974-38944975	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs61839286	chr10:38944985-38944986	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs543472662	chr10:38944991-38944992	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs563767403	chr10:38944993-38944994	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs577401569	chr10:38944996-38944997	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs546349741	chr10:38945007-38945008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs11146897	chr10:38945015-38945016	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs528335787	chr10:38945049-38945050	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs530185003	chr10:38965037-38965038	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs115144286	chr10:38965038-38965039	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs570160696	chr10:38965040-38965041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs61840790	chr10:38965041-38965042	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs532194507	chr10:38965061-38965062	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs11146907	chr10:38965080-38965081	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs71010455	chr10:38965115-38965116	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs552389453	chr10:38965117-38965118	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs565834627	chr10:38965118-38965119	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs71500442	chr10:38965121-38965122	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs12765684	chr10:38965132-38965133	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs186535400	chr10:38965137-38965138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs11146908	chr10:38965144-38965145	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs556620888	chr10:38965161-38965162	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs576910645	chr10:38965163-38965164	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs4088448	chr10:38965166-38965167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs545266162	chr10:38965167-38965168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs74137031	chr10:38965174-38965175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs572614064	chr10:38965196-38965197	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs541764054	chr10:38965207-38965208	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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