Variant report

Variant	nsv948278
Chromosome Location	chr10:39057358-39058105
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL11A	chr10:39057780-39057946	GM12878	blood:	n/a	n/a
2	EP300	chr10:39057630-39058234	GM12878	blood:	n/a	n/a
3	GABPA	chr10:39057600-39057736	Hela-S3	cervix:	n/a	n/a
4	GABPA	chr10:39057857-39058084	Hela-S3	cervix:	n/a	n/a
5	IRF4	chr10:39057582-39057969	GM12878	blood:	n/a	n/a
6	JUND	chr10:39057779-39057983	HepG2	liver:	n/a	n/a
7	PAX5	chr10:39057405-39057761	GM12878	blood:	n/a	n/a
8	PAX5	chr10:39057639-39058149	GM12878	blood:	n/a	n/a
9	POU2F2	chr10:39057509-39058436	GM12878	blood:	n/a	n/a
10	RXRA	chr10:39057646-39058040	HepG2	liver:	n/a	n/a
11	SIX5	chr10:39057911-39058334	K562	blood:	n/a	n/a
12	SP1	chr10:39057825-39058144	GM12878	blood:	n/a	n/a
13	SP1	chr10:39057633-39057900	HepG2	liver:	n/a	n/a
14	ZBTB33	chr10:39057513-39058260	GM12878	blood:	n/a	n/a
15	ZBTB33	chr10:39057753-39058278	GM12878	blood:	n/a	n/a
16	ZBTB33	chr10:39058059-39058399	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000227679	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs34086829	chr10:39057409-39057410	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs565253829	chr10:39057435-39057436	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs527650581	chr10:39057444-39057445	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs61839635	chr10:39057450-39057451	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs547415796	chr10:39057463-39057464	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs545504156	chr10:39057481-39057482	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs71010467	chr10:39057504-39057505	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs11146689	chr10:39057517-39057518	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs539613217	chr10:39057522-39057523	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs553262462	chr10:39057533-39057534	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs189080350	chr10:39057550-39057551	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs28515184	chr10:39057558-39057559	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs549944563	chr10:39057566-39057567	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs192181429	chr10:39057573-39057574	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs61840297	chr10:39057577-39057578	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs552463565	chr10:39057588-39057589	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs147247663	chr10:39057592-39057593	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs28678203	chr10:39057594-39057595	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs566000209	chr10:39057597-39057598	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs11596538	chr10:39057602-39057603	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs61840298	chr10:39057606-39057607	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs61840299	chr10:39057618-39057619	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs371569491	chr10:39057619-39057620	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs200390528	chr10:39057629-39057630	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs554647779	chr10:39057633-39057634	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs574475099	chr10:39057635-39057636	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs369746287	chr10:39057648-39057649	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs201063211	chr10:39057655-39057656	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs113990980	chr10:39057669-39057670	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs536703129	chr10:39057672-39057673	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs557028927	chr10:39057681-39057682	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs576527392	chr10:39057696-39057697	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs545218304	chr10:39057706-39057707	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs565215642	chr10:39057717-39057718	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs11594837	chr10:39057721-39057722	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs541016210	chr10:39057725-39057726	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs201731906	chr10:39057726-39057727	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs202015861	chr10:39057740-39057741	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs199526009	chr10:39057759-39057760	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs199637993	chr10:39057760-39057761	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs530107303	chr10:39057762-39057763	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs182271489	chr10:39057774-39057775	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs557858938	chr10:39057793-39057794	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs563817052	chr10:39057809-39057810	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs532176485	chr10:39057812-39057813	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs552438604	chr10:39057813-39057814	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs577927225	chr10:39057829-39057830	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs4070011	chr10:39057857-39057858	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs528444288	chr10:39057871-39057872	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs377740326	chr10:39057883-39057884	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links