Variant report

Variant	nsv948280
Chromosome Location	chr10:39059187-39065843
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:39062460-39062511	GM10248	blood:	n/a	n/a
2	FOSL2	chr10:39059468-39059798	HepG2	liver:	n/a	n/a
3	FOSL2	chr10:39062371-39062631	HepG2	liver:	n/a	n/a
4	IRF4	chr10:39063315-39063587	GM12878	blood:	n/a	n/a
5	JUND	chr10:39059623-39059765	HepG2	liver:	n/a	n/a
6	PAX5	chr10:39062462-39062640	GM12878	blood:	n/a	n/a
7	PAX5	chr10:39059428-39059663	GM12878	blood:	n/a	n/a
8	POU2F2	chr10:39063016-39063151	GM12878	blood:	n/a	n/a
9	POU2F2	chr10:39059499-39059944	GM12878	blood:	n/a	n/a
10	RXRA	chr10:39059900-39060175	HepG2	liver:	n/a	n/a
11	SIX5	chr10:39064023-39064261	GM12878	blood:	n/a	n/a
12	SP1	chr10:39062969-39063233	GM12878	blood:	n/a	n/a
13	TAF1	chr10:39059938-39060116	Hela-S3	cervix:	n/a	n/a
14	TCF12	chr10:39059666-39059842	HepG2	liver:	n/a	n/a
15	TCF12	chr10:39059932-39060095	GM12878	blood:	n/a	n/a
16	USF1	chr10:39059942-39060103	HepG2	liver:	n/a	n/a
17	USF1	chr10:39063023-39063156	HepG2	liver:	n/a	n/a
18	USF1	chr10:39059435-39059571	HepG2	liver:	n/a	n/a
19	ZBTB33	chr10:39059520-39059785	HepG2	liver:	n/a	n/a
20	ZBTB33	chr10:39063289-39063589	K562	blood:	n/a	n/a
21	ZBTB33	chr10:39063017-39063144	HepG2	liver:	n/a	n/a
22	ZBTB33	chr10:39062437-39062583	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000227679	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9783187	chr10:39059435-39059436	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs4070008	chr10:39059439-39059440	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs566816408	chr10:39059461-39059462	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs535495807	chr10:39059463-39059464	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs61840312	chr10:39059489-39059490	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs61684491	chr10:39059498-39059499	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs201117660	chr10:39059506-39059507	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs4102336	chr10:39059514-39059515	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs4102335	chr10:39059531-39059532	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs12254723	chr10:39059545-39059546	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs202022833	chr10:39059556-39059557	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs3878081	chr10:39059577-39059578	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs569279304	chr10:39059582-39059583	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs4102334	chr10:39059584-39059585	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs182563041	chr10:39059601-39059602	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs77082952	chr10:39059607-39059608	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs56320862	chr10:39059622-39059623	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs76221192	chr10:39059630-39059631	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs111882488	chr10:39059647-39059648	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs61840313	chr10:39059648-39059649	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs56388826	chr10:39059649-39059650	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs376203322	chr10:39059650-39059651	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs71529030	chr10:39059658-39059659	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs11146694	chr10:39059673-39059674	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs9783137	chr10:39059681-39059682	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs76747128	chr10:39059683-39059684	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs9783197	chr10:39059686-39059687	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs74537303	chr10:39059689-39059690	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs374170482	chr10:39059691-39059692	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs11146695	chr10:39059700-39059701	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs3878082	chr10:39059703-39059704	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs377607498	chr10:39059707-39059708	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs74875920	chr10:39059711-39059712	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs77446011	chr10:39059720-39059721	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs60691317	chr10:39059726-39059727	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs60227063	chr10:39059745-39059746	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs372510600	chr10:39059762-39059763	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs377194324	chr10:39059768-39059769	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs201431860	chr10:39059772-39059773	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs199684867	chr10:39059781-39059782	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs553669405	chr10:39059782-39059783	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs61094585	chr10:39059812-39059813	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs368440169	chr10:39059816-39059817	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs60136081	chr10:39059817-39059818	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs200610020	chr10:39059827-39059828	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs12161708	chr10:39059872-39059873	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs3970293	chr10:39059893-39059894	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs201255048	chr10:39059921-39059922	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs9783181	chr10:39059939-39059940	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs542286552	chr10:39059969-39059970	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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