Variant report

Variant	nsv948284
Chromosome Location	chr10:42605063-42611348
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 564 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:564 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4145693	chr10:42605118-42605119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs200610654	chr10:42605119-42605120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs528594339	chr10:42605128-42605129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs202051548	chr10:42605129-42605130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376283874	chr10:42605137-42605138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs76911269	chr10:42605147-42605148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199974717	chr10:42605152-42605153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200025171	chr10:42605163-42605164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370223597	chr10:42605171-42605172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181492334	chr10:42605176-42605177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs375571184	chr10:42605179-42605180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs561792097	chr10:42605198-42605199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201283924	chr10:42605211-42605212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530704266	chr10:42605212-42605213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs12164701	chr10:42605221-42605222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs78856484	chr10:42605226-42605227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75725886	chr10:42605235-42605236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs78065352	chr10:42605241-42605242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs374044784	chr10:42605261-42605262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs199936763	chr10:42605262-42605263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12164702	chr10:42605273-42605274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs570728033	chr10:42605275-42605276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113741399	chr10:42605277-42605278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371427618	chr10:42605285-42605286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200963788	chr10:42605297-42605298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs74328780	chr10:42605307-42605308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372335212	chr10:42605313-42605314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs556464322	chr10:42605326-42605327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs376548688	chr10:42605331-42605332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs75178133	chr10:42605341-42605342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs546789298	chr10:42605345-42605346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs61845467	chr10:42605348-42605349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs61845468	chr10:42605351-42605352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs535572664	chr10:42605367-42605368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs555400331	chr10:42605372-42605373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs199632241	chr10:42605400-42605401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374568289	chr10:42605407-42605408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs367753064	chr10:42605422-42605423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200255645	chr10:42605430-42605431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs375434671	chr10:42605437-42605438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201329483	chr10:42605449-42605450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537853267	chr10:42605450-42605451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs76563419	chr10:42605456-42605457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74900826	chr10:42605457-42605458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs376046943	chr10:42605461-42605462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200791588	chr10:42605465-42605466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373687913	chr10:42605466-42605467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs61845469	chr10:42605489-42605490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs79750497	chr10:42605496-42605497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs577478570	chr10:42605497-42605498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	20531469	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42600200-42606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42602200-42605800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:42605800-42608800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr10:42606400-42607800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:42606400-42608800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr10:42606400-42608800	ZNF genes & repeats	Fetal Stomach	stomach
7	chr10:42606400-42609000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:42606600-42608400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr10:42606800-42608400	ZNF genes & repeats	Placenta	Placenta

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