Variant report

Variant	nsv948304
Chromosome Location	chr10:42656977-42658351
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:145 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567567789	chr10:42656986-42656987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs113520486	chr10:42656990-42656991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs75327531	chr10:42657000-42657001	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs76022967	chr10:42657003-42657004	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs61848679	chr10:42657010-42657011	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs536595354	chr10:42657012-42657013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs549797098	chr10:42657016-42657017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs61848680	chr10:42657030-42657031	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs569865788	chr10:42657032-42657033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs34873493	chr10:42657041-42657042	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs371501474	chr10:42657058-42657059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs113730601	chr10:42657075-42657076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs186325022	chr10:42657100-42657101	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs79318534	chr10:42657103-42657104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs12381008	chr10:42657112-42657113	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs12381009	chr10:42657125-42657126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs144632751	chr10:42657140-42657141	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs75620897	chr10:42657157-42657158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs75845992	chr10:42657159-42657160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs34122030	chr10:42657162-42657163	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs571774392	chr10:42657172-42657173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs534327360	chr10:42657179-42657180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs112654521	chr10:42657185-42657186	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs554098391	chr10:42657188-42657189	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs574094100	chr10:42657189-42657190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs543348802	chr10:42657192-42657193	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs563028298	chr10:42657193-42657194	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs576595594	chr10:42657197-42657198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs76280453	chr10:42657216-42657217	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111788544	chr10:42657218-42657219	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182059258	chr10:42657219-42657220	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs76895004	chr10:42657220-42657221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545235265	chr10:42657222-42657223	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186738165	chr10:42657230-42657231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372277825	chr10:42657232-42657233	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527737378	chr10:42657240-42657241	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs9731876	chr10:42657243-42657244	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs116366465	chr10:42657260-42657261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs111276680	chr10:42657263-42657264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs375339700	chr10:42657267-42657268	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369539135	chr10:42657276-42657277	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs373004688	chr10:42657286-42657287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs547907469	chr10:42657297-42657298	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs77660854	chr10:42657309-42657310	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112686815	chr10:42657318-42657319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs78806893	chr10:42657329-42657330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs78052139	chr10:42657358-42657359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561305483	chr10:42657368-42657369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs73249831	chr10:42657397-42657398	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530101430	chr10:42657404-42657405	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655400-42657400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr10:42656400-42657400	ZNF genes & repeats	Fetal Lung	lung
4	chr10:42656600-42657400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:42656600-42657600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr10:42656800-42657400	ZNF genes & repeats	Fetal Brain Male	brain
7	chr10:42657000-42657200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:42657200-42661200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:42657400-42659000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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