Variant report

Variant	nsv948307
Chromosome Location	chr10:42659254-42669241
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1477 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1477 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10444153	chr10:42659276-42659277	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs61848711	chr10:42659281-42659282	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs61848712	chr10:42659283-42659284	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs577236531	chr10:42659289-42659290	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs539460493	chr10:42659301-42659302	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs552992437	chr10:42659309-42659310	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs572900119	chr10:42659311-42659312	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs10444179	chr10:42659328-42659329	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs10444154	chr10:42659334-42659335	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs78663622	chr10:42659339-42659340	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs367624679	chr10:42659369-42659370	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs61848713	chr10:42659372-42659373	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs10444155	chr10:42659377-42659378	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs61188086	chr10:42659391-42659392	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs371740499	chr10:42659400-42659401	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs575366293	chr10:42659413-42659414	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs61848714	chr10:42659418-42659419	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs77250975	chr10:42659427-42659428	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs376028469	chr10:42659439-42659440	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs78462525	chr10:42659441-42659442	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs12266495	chr10:42659451-42659452	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs533017131	chr10:42659456-42659457	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs546707826	chr10:42659459-42659460	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs560236411	chr10:42659466-42659467	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs528871958	chr10:42659475-42659476	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs368802139	chr10:42659477-42659478	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs371869479	chr10:42659483-42659484	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs568700155	chr10:42659496-42659497	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs537266487	chr10:42659508-42659509	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs61846222	chr10:42659518-42659519	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs10444180	chr10:42659530-42659531	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs551116149	chr10:42659531-42659532	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs374881508	chr10:42659539-42659540	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs61846223	chr10:42659546-42659547	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs570705013	chr10:42659552-42659553	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs539593618	chr10:42659555-42659556	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs79187865	chr10:42659558-42659559	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs79959797	chr10:42659561-42659562	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs75939781	chr10:42659567-42659568	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs189379594	chr10:42659575-42659576	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs553029332	chr10:42659582-42659583	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs79703914	chr10:42659636-42659637	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs76146611	chr10:42659637-42659638	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs201285822	chr10:42659645-42659646	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs535808477	chr10:42659654-42659655	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs199834840	chr10:42659655-42659656	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs145785804	chr10:42659656-42659657	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs148005793	chr10:42659660-42659661	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs74369507	chr10:42659662-42659663	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs140118484	chr10:42659663-42659664	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42657200-42661200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:42659400-42661200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:42660000-42668200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr10:42660400-42668000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:42660400-42668000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr10:42660600-42661200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:42660600-42668000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:42660800-42661000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:42661000-42667600	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr10:42661200-42661600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:42661200-42661600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:42661200-42661600	ZNF genes & repeats	Pancreas	Pancrea
14	chr10:42661200-42661600	ZNF genes & repeats	Right Atrium	heart
15	chr10:42661200-42661600	ZNF genes & repeats	HSMMtube	muscle
16	chr10:42661200-42661600	ZNF genes & repeats	NHDF-Ad	bronchial
17	chr10:42661200-42661800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:42661200-42661800	ZNF genes & repeats	Aorta	Aorta
19	chr10:42661200-42661800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:42661200-42661800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
21	chr10:42661200-42661800	ZNF genes & repeats	Spleen	Spleen
22	chr10:42661200-42662000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr10:42661200-42662000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
24	chr10:42661200-42662000	ZNF genes & repeats	Gastric	stomach
25	chr10:42661200-42662000	ZNF genes & repeats	Dnd41	blood
26	chr10:42661200-42662200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:42661200-42662600	ZNF genes & repeats	Brain Hippocampus Middle	brain
28	chr10:42661200-42663000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:42661200-42663200	ZNF genes & repeats	Brain Anterior Caudate	brain
30	chr10:42661200-42663200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
31	chr10:42661200-42664400	ZNF genes & repeats	Brain Angular Gyrus	brain
32	chr10:42661200-42667000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr10:42661200-42667200	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr10:42661200-42667400	ZNF genes & repeats	K562	blood
35	chr10:42661200-42667600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
36	chr10:42661200-42667600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:42661200-42667600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
38	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
39	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr10:42661200-42667600	ZNF genes & repeats	Fetal Brain Male	brain
41	chr10:42661200-42667600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr10:42661200-42667800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr10:42661200-42667800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:42661200-42667800	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr10:42661200-42667800	ZNF genes & repeats	Fetal Heart	heart
46	chr10:42661200-42667800	ZNF genes & repeats	Fetal Lung	lung
47	chr10:42661200-42668000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
48	chr10:42661200-42668200	ZNF genes & repeats	Liver	Liver
49	chr10:42661400-42661600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:42661400-42661800	ZNF genes & repeats	NHEK	skin

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