Variant report

Variant	nsv948312
Chromosome Location	chr10:42682116-42692686
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-9	chr10:42686975-42687136	NONHSAT012855
2	lnc-BMS1-9	chr10:42687963-42689514	NONHSAT012855

Extended variants
information (count: 79 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:79 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78473109	chr10:42687055-42687056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs572040421	chr10:42687061-42687062	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs534628163	chr10:42687072-42687073	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs554587981	chr10:42687073-42687074	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs117750073	chr10:42687095-42687096	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs184925088	chr10:42687096-42687097	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs543314426	chr10:42687135-42687136	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs528197268	chr10:42687976-42687977	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs548266256	chr10:42687991-42687992	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs534683181	chr10:42688004-42688005	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs183590497	chr10:42688013-42688014	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs187475242	chr10:42688040-42688041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs4625409	chr10:42688042-42688043	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs192477516	chr10:42688057-42688058	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs556663381	chr10:42688090-42688091	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs570362847	chr10:42688146-42688147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs12414128	chr10:42688176-42688177	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs543744041	chr10:42688178-42688179	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs556937454	chr10:42688219-42688220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs572261791	chr10:42688242-42688243	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs541138928	chr10:42688243-42688244	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs200338784	chr10:42688283-42688284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs376672325	chr10:42688308-42688309	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs574568660	chr10:42688314-42688315	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs184842699	chr10:42688376-42688377	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs563497719	chr10:42688380-42688381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs186504769	chr10:42688400-42688401	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs192721300	chr10:42688401-42688402	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs559596800	chr10:42688406-42688407	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs184637668	chr10:42688469-42688470	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs548401740	chr10:42688499-42688500	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs568190363	chr10:42688558-42688559	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs530507815	chr10:42688559-42688560	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs79404313	chr10:42688628-42688629	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs375390396	chr10:42688650-42688651	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs56908850	chr10:42688651-42688652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs189910339	chr10:42688666-42688667	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs570326556	chr10:42688695-42688696	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs372528391	chr10:42688717-42688718	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs549772589	chr10:42688723-42688724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs12260937	chr10:42688804-42688805	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs527815776	chr10:42688864-42688865	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs566026781	chr10:42688870-42688871	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs12257517	chr10:42688911-42688912	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs554723862	chr10:42688947-42688948	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs574607029	chr10:42688963-42688964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs543523050	chr10:42688968-42688969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs189264519	chr10:42688982-42688983	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs59955462	chr10:42688983-42688984	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs530186852	chr10:42689008-42689009	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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