Variant report

Variant nsv948358
Chromosome Location chr6:55351282-55477277
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:307 , 50 per page) page: 1 2 3 4 5 6 7
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:55352400-55355200 Weak transcription Brain Inferior Temporal Lobe brain
2 chr6:55358000-55358200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr6:55358000-55358200 Enhancers NHEK skin
4 chr6:55358200-55359200 Weak transcription NHEK skin
5 chr6:55358800-55359000 Bivalent/Poised TSS Fetal Muscle Trunk muscle
6 chr6:55359000-55359400 Enhancers Colon Smooth Muscle Colon
7 chr6:55359000-55360400 Enhancers Fetal Lung lung
8 chr6:55359200-55361400 Enhancers NHEK skin
9 chr6:55359200-55361600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr6:55359800-55361600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr6:55359800-55361600 Enhancers HMEC breast
12 chr6:55360000-55360400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr6:55360400-55361400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr6:55360600-55361800 Enhancers Muscle Satellite Cultured Cells --
15 chr6:55361200-55361600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr6:55362400-55363000 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr6:55362400-55363000 Enhancers HUES48 Cell Line embryonic stem cell
18 chr6:55362400-55363000 Enhancers HUES64 Cell Line embryonic stem cell
19 chr6:55362400-55363000 Enhancers iPS-18 Cell Line embryonic stem cell
20 chr6:55376400-55399200 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr6:55376800-55396400 Weak transcription Left Ventricle heart
22 chr6:55384200-55384400 Enhancers Pancreatic Islets Pancreatic Islet
23 chr6:55384400-55410200 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr6:55385800-55386200 Enhancers Fetal Lung lung
25 chr6:55387400-55388200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr6:55389200-55390400 Enhancers iPS-18 Cell Line embryonic stem cell
27 chr6:55389400-55390400 Enhancers iPS-15b Cell Line embryonic stem cell
28 chr6:55389400-55390600 Enhancers HUES48 Cell Line embryonic stem cell
29 chr6:55393600-55393800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
30 chr6:55394000-55407200 Weak transcription Fetal Muscle Leg muscle
31 chr6:55395800-55396200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr6:55396400-55396600 Enhancers Left Ventricle heart
33 chr6:55396600-55396800 Weak transcription Left Ventricle heart
34 chr6:55399200-55400400 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr6:55399200-55402400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr6:55400400-55418600 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr6:55400600-55404000 Weak transcription Fetal Lung lung
38 chr6:55402400-55402600 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr6:55402400-55402600 Enhancers Esophagus oesophagus
40 chr6:55404000-55404200 Strong transcription Fetal Lung lung
41 chr6:55404200-55404400 ZNF genes & repeats Fetal Lung lung
42 chr6:55404400-55407600 Weak transcription Fetal Lung lung
43 chr6:55408400-55408800 Enhancers ES-I3 Cell Line embryonic stem cell
44 chr6:55410200-55411000 Enhancers Pancreatic Islets Pancreatic Islet
45 chr6:55411000-55411400 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr6:55411400-55412400 Enhancers Pancreatic Islets Pancreatic Islet
47 chr6:55412400-55412600 Flanking Active TSS Pancreatic Islets Pancreatic Islet
48 chr6:55412600-55413000 Active TSS Pancreatic Islets Pancreatic Islet
49 chr6:55413000-55413200 Flanking Active TSS Pancreatic Islets Pancreatic Islet
50 chr6:55413200-55413400 Enhancers Pancreatic Islets Pancreatic Islet

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