Variant report

Variant	nsv948522
Chromosome Location	chr15:55639867-56032099
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4334)
CpG islands
(count:4277)
Chromatin interactive
region (count:201)
LncRNA
region (count:8)
Mature miRNA
region (count: 2)
miRNA target
sites (count:8)

(count:4334 , 50 per page) page: 1 2 3 4 5 6 7 ... 87

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:55933818-55934139	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:55688544-55689215	K562	blood:	n/a	n/a
3	ARID3A	chr15:55818712-55819023	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:55654793-55654993	HepG2	liver:	n/a	n/a
5	ARID3A	chr15:55772283-55772392	HepG2	liver:	n/a	n/a
6	ARID3A	chr15:55806152-55806285	K562	blood:	n/a	n/a
7	ARID3A	chr15:55693945-55694278	K562	blood:	n/a	n/a
8	ARID3A	chr15:55790421-55790685	HepG2	liver:	n/a	n/a
9	ARID3A	chr15:55699681-55700995	HepG2	liver:	n/a	chr15:55699936-55699952
10	ARID3A	chr15:55700139-55701084	K562	blood:	n/a	n/a
11	ARID3A	chr15:56001018-56001195	HepG2	liver:	n/a	n/a
12	ARID3A	chr15:55694987-55696143	K562	blood:	n/a	n/a
13	ARID3A	chr15:55695766-55696116	HepG2	liver:	n/a	n/a
14	ARID3A	chr15:55711482-55711586	HepG2	liver:	n/a	n/a
15	ARID3A	chr15:55933805-55934122	K562	blood:	n/a	n/a
16	ARID3A	chr15:55662471-55662715	HepG2	liver:	n/a	n/a
17	ATF1	chr15:55700302-55701186	K562	blood:	n/a	n/a
18	ATF1	chr15:55731955-55732174	K562	blood:	n/a	n/a
19	ATF1	chr15:55695695-55696130	K562	blood:	n/a	n/a
20	ATF1	chr15:55939036-55939172	K562	blood:	n/a	n/a
21	ATF2	chr15:55986675-55987097	GM12878	blood:	n/a	n/a
22	ATF2	chr15:55700338-55700728	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr15:55700143-55700984	GM12878	blood:	n/a	n/a
24	ATF2	chr15:55977363-55977942	GM12878	blood:	n/a	n/a
25	ATF2	chr15:55700234-55700505	GM12878	blood:	n/a	n/a
26	ATF2	chr15:55977465-55977883	GM12878	blood:	n/a	n/a
27	ATF2	chr15:55986700-55987145	GM12878	blood:	n/a	n/a
28	ATF3	chr15:55818618-55819080	H1-hESC	embryonic stem cell:	n/a	n/a
29	ATF3	chr15:55697469-55697665	K562	blood:	n/a	n/a
30	ATF3	chr15:55818765-55819007	K562	blood:	n/a	n/a
31	ATF3	chr15:55695638-55696206	K562	blood:	n/a	n/a
32	ATF3	chr15:55700358-55700740	K562	blood:	n/a	n/a
33	ATF3	chr15:55700118-55701112	A549	lung:	n/a	n/a
34	BACH1	chr15:55700665-55700854	K562	blood:	n/a	n/a
35	BACH1	chr15:55653033-55653079	K562	blood:	n/a	n/a
36	BACH1	chr15:55693951-55694258	K562	blood:	n/a	n/a
37	BACH1	chr15:55790323-55790739	H1-hESC	embryonic stem cell:	n/a	n/a
38	BACH1	chr15:55879929-55880216	H1-hESC	embryonic stem cell:	n/a	n/a
39	BACH1	chr15:55880445-55881363	H1-hESC	embryonic stem cell:	n/a	n/a
40	BACH1	chr15:55845070-55845357	H1-hESC	embryonic stem cell:	n/a	n/a
41	BACH1	chr15:55928620-55928792	H1-hESC	embryonic stem cell:	n/a	n/a
42	BACH1	chr15:55695752-55696274	K562	blood:	n/a	n/a
43	BACH1	chr15:55700619-55701045	H1-hESC	embryonic stem cell:	n/a	n/a
44	BACH1	chr15:55659431-55659478	K562	blood:	n/a	n/a
45	BATF	chr15:55834632-55834829	GM12878	blood:	n/a	n/a
46	BATF	chr15:55977485-55977821	GM12878	blood:	n/a	n/a
47	BATF	chr15:55993148-55993363	GM12878	blood:	n/a	chr15:55993286-55993297
48	BATF	chr15:55977447-55977812	GM12878	blood:	n/a	n/a
49	BATF	chr15:55986766-55987079	GM12878	blood:	n/a	chr15:55986877-55986886
50	BATF	chr15:55993172-55993423	GM12878	blood:	n/a	chr15:55993286-55993297

(count:4277 , 50 per page) page: 1 2 3 4 5 6 7 ... 86

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:55806536-55806586	HCF	heart:	n/a
2	chr15:55700768-55700818	GM12892	blood:	n/a
3	chr15:55700587-55700637	IMR90	lung:	fetal
4	chr15:55790753-55790803	AG04449	skin:	fetal
5	chr15:55880997-55881047	HRE	kidney:	n/a
6	chr15:55710020-55710070	H1-hESC	embryonic stem cell:	embryo
7	chr15:55881044-55881094	T-47D	breast:	n/a
8	chr15:55806536-55806586	HCF	heart:	n/a
9	chr15:55700768-55700818	GM12892	blood:	n/a
10	chr15:55700587-55700637	IMR90	lung:	fetal
11	chr15:55790753-55790803	AG04449	skin:	fetal
12	chr15:55880997-55881047	HRE	kidney:	n/a
13	chr15:55710020-55710070	H1-hESC	embryonic stem cell:	embryo
14	chr15:55881044-55881094	T-47D	breast:	n/a
15	chr15:55700689-55700739	AG09319	gingival:	n/a
16	chr15:55704519-55704569	HMEC	breast:	n/a
17	chr15:55806536-55806586	K562	blood:	n/a
18	chr15:55788778-55788828	HPAEpiC	pulmonary alveolar:	n/a
19	chr15:55700894-55700944	RPTEC	kidney:	n/a
20	chr15:55881599-55881649	GM12878	blood:	n/a
21	chr15:55700768-55700818	HRCEpiC	kidney:	n/a
22	chr15:56014697-56014747	AG10803	skin:	n/a
23	chr15:55799927-55799977	HCT-116	colon:	n/a
24	chr15:55881246-55881296	HRPEpiC	eye:	n/a
25	chr15:55790753-55790803	PFSK-1	brain:	n/a
26	chr15:55665153-55665203	Hepatocyte	liver:	n/a
27	chr15:55700431-55700481	RPTEC	kidney:	n/a
28	chr15:55699975-55700025	ECC-1	luminal epithelium:	n/a
29	chr15:55704519-55704569	A549	lung:	n/a
30	chr15:55737718-55737768	BJ	skin:	n/a
31	chr15:55700780-55700830	PrEC	prostate:	n/a
32	chr15:55788778-55788828	HepG2	liver:	n/a
33	chr15:55880997-55881047	HNPCEpiC	eye:	n/a
34	chr15:55700894-55700944	Jurkat	blood:	n/a
35	chr15:55800831-55800881	H1-hESC	embryonic stem cell:	embryo
36	chr15:55881607-55881657	AG04450	lung:	fetal
37	chr15:55791821-55791871	SK-N-SH	brain:	n/a
38	chr15:55790509-55790559	ProgFib	skin:	n/a
39	chr15:55700471-55700521	SK-N-MC	brain:	n/a
40	chr15:55911779-55911829	HMEC	breast:	n/a
41	chr15:55710020-55710070	HMEC	breast:	n/a
42	chr15:55880089-55880139	Hela-S3	cervix:	n/a
43	chr15:55880997-55881047	HEEpiC	esophagus:	n/a
44	chr15:55700549-55700599	HCM	heart:	n/a
45	chr15:55700894-55700944	HRE	kidney:	n/a
46	chr15:55881044-55881094	HPAEpiC	pulmonary alveolar:	n/a
47	chr15:55704519-55704569	ProgFib	skin:	n/a
48	chr15:55700431-55700481	MCF10A-Er-Src	breast:	n/a
49	chr15:55704519-55704569	GM12891	blood:	n/a
50	chr15:55790675-55790725	NB4	blood:	n/a

(count:201 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr15:55805811..55806979-chr15:55933287..55934076,3	MCF-7	breast:
2	chr15:55833138..55835876-chr15:55835973..55838039,2	K562	blood:
3	chr15:55641994..55643661-chr15:55645653..55648003,2	K562	blood:
4	chr15:55486571..55489386-chr15:55698193..55701285,4	K562	blood:
5	chr15:55965960..55968011-chr15:56032220..56035162,2	MCF-7	breast:
6	chr15:55938125..55940759-chr15:56034176..56036288,2	MCF-7	breast:
7	chr15:55610804..55613715-chr15:55685567..55687779,2	K562	blood:
8	chr15:55609847..55611398-chr15:55646178..55648636,2	K562	blood:
9	chr15:55940286..55941226-chr15:56189659..56190472,2	MCF-7	breast:
10	chr15:55961153..55963651-chr15:56033694..56036455,3	MCF-7	breast:
11	chr15:55957804..55959845-chr15:56026147..56028031,2	MCF-7	breast:
12	chr15:55956127..55957682-chr15:55978986..55980694,2	MCF-7	breast:
13	chr15:55607556..55615100-chr15:55699006..55703115,13	K562	blood:
14	chr15:55659246..55661833-chr15:55665281..55667485,2	K562	blood:
15	chr15:55699692..55700583-chr3:169482758..169483656,2	Hela-S3	cervix:
16	chr15:55635158..55636900-chr15:55648731..55651543,2	MCF-7	breast:
17	chr15:55687039..55689361-chr15:55690418..55692819,3	K562	blood:
18	chr15:55993287..55995183-chr15:55997078..55999986,2	K562	blood:
19	chr15:55656734..55659710-chr15:55662941..55665485,2	MCF-7	breast:
20	chr15:55646940..55648644-chr15:55651865..55653826,3	K562	blood:
21	chr15:55610603..55613441-chr15:55640435..55642887,3	K562	blood:
22	chr12:92538794..92539703-chr15:55699924..55700498,2	Hela-S3	cervix:
23	chr15:55708123..55710711-chr15:55711539..55714446,2	K562	blood:
24	chr15:55696852..55699665-chr15:55712534..55714960,2	K562	blood:
25	chr15:55948243..55950096-chr15:55952230..55953920,2	MCF-7	breast:
26	chr15:55686108..55691081-chr15:55692026..55698243,11	K562	blood:
27	chr15:55940282..55941119-chr15:56116751..56117288,2	MCF-7	breast:
28	chr15:55818426..55819436-chr15:55933526..55934353,4	MCF-7	breast:
29	chr15:55608625..55613147-chr15:55698683..55702764,8	MCF-7	breast:
30	chr15:55824404..55826095-chr15:55826140..55828917,2	MCF-7	breast:
31	chr15:55936558..55938114-chr15:55939033..55941935,2	K562	blood:
32	chr15:55641994..55643661-chr15:55645653..55648003,2	K562	blood:
33	chr15:55687284..55689317-chr15:55695984..55697982,2	MCF-7	breast:
34	chr15:55711236..55714133-chr15:55717728..55719591,2	K562	blood:
35	chr15:55940297..55941155-chr15:56138005..56138994,3	K562	blood:
36	chr15:55641489..55644289-chr15:55644644..55647294,3	MCF-7	breast:
37	chr15:55509498..55510422-chr15:55731553..55732482,2	K562	blood:
38	chr15:55687261..55690621-chr15:55699123..55703142,5	K562	blood:
39	chr15:55699965..55700846-chr15:65587988..65588628,2	Hela-S3	cervix:
40	chr15:55486981..55489906-chr15:55690724..55692379,2	K562	blood:
41	chr15:55610027..55612992-chr15:55688713..55692198,3	K562	blood:
42	chr15:55638918..55640677-chr15:55646160..55647680,2	K562	blood:
43	chr15:55883057..55885879-chr15:55889260..55891781,2	K562	blood:
44	chr15:55710896..55714133-chr15:55717457..55719591,3	K562	blood:
45	chr15:55871829..55873801-chr15:55877052..55878758,2	K562	blood:
46	chr15:55833138..55835876-chr15:55835973..55838039,2	K562	blood:
47	chr15:55641538..55644525-chr15:55662930..55665274,2	MCF-7	breast:
48	chr15:56013890..56016353-chr15:56030511..56032311,2	MCF-7	breast:
49	chr15:55940259..55941893-chr15:56091674..56092667,4	K562	blood:
50	chr15:55940251..55940793-chr15:56189676..56190326,2	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-178D12.1.1-5	chr15:55880889-55881017	NONHSAT044003
2	lnc-PYGO1-2	chr15:55904946-55906620	NONHSAT044004
3	lnc-PYGO1-1	chr15:55831082-55834829	NONHSAT044002
4	lnc-PYGO1-2	chr15:55903750-55904914	NONHSAT044004
5	lnc-RP11-178D12.1.1-5	chr15:55881501-55882082	NONHSAT044003
6	lnc-RAB27A-2	chr15:55640530-55640664	NONHSAT043992
7	lnc-RAB27A-2	chr15:55640530-55640920	NONHSAT043994
8	lnc-NEDD4-2	chr15:56030403-56030857	NONHSAT044007

miRNA name	Chromosome Location	mirBase accession
hsa-miR-628-3p	chr15:55665152-55665172	MIMAT0003297
hsa-miR-628-5p	chr15:55665189-55665210	MIMAT0004809

(count:8 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	CCPG1	hsa-miR-30a-5p	chr15:55648622-55648616
2	CCPG1	hsa-miR-30a-5p	chr15:55647461-55647482
3	CCPG1	hsa-miR-30a-5p	chr15:55648616-55648637
4	PRTG	hsa-let-7b-5p	chr15:55911797-55911790
5	CCPG1	hsa-miR-30a-5p	chr15:55647691-55647712
6	PRTG	hsa-let-7b-5p	chr15:55910225-55910219
7	PRTG	hsa-let-7b-5p	chr15:55911754-55911748
8	PRTG	hsa-let-7b-5p	chr15:55910219-55910240

Variant related genes	Relation type
C15orf65	TF binding region
PRTG	TF binding region
ENSG00000259180	TF binding region
CCPG1	TF binding region
DYX1C1-CCPG1	TF binding region
DYX1C1	TF binding region
ENSG00000260036	TF binding region
MIR628	TF binding region
PYGO1	TF binding region
PIGB	TF binding region
C15orf65	CpG island
PRTG	CpG island
ENSG00000259180	CpG island
CCPG1	CpG island
DYX1C1-CCPG1	CpG island
DYX1C1	CpG island
ENSG00000260036	CpG island
MIR628	CpG island
PYGO1	CpG island
PIGB	CpG island
ENSG00000199568	chromatin interactions
ENSG00000270141	chromatin interactions
ENSG00000166450	chromatin interactions
ENSG00000069974	chromatin interactions
ENSG00000259369	chromatin interactions
ENSG00000107164	chromatin interactions
ENSG00000261771	chromatin interactions
ENSG00000207964	chromatin interactions
ENSG00000186063	chromatin interactions
ENSG00000256061	chromatin interactions
ENSG00000133639	chromatin interactions
ENSG00000260916	chromatin interactions
ENSG00000198755	chromatin interactions
ENSG00000259180	chromatin interactions
ENSG00000137876	chromatin interactions
ENSG00000225973	chromatin interactions
ENSG00000069943	chromatin interactions
ENSG00000083544	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000261652	chromatin interactions
ENSG00000171016	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000072042	chromatin interactions
ENSG00000160310	chromatin interactions
ENSG00000245904	chromatin interactions
NELFE	Mature miRNA region
TGFBRAP1	Mature miRNA region
CDC14A	Mature miRNA region
LRP6	Mature miRNA region
AGO1	Mature miRNA region

Extended variants
information (count: 16396 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:16396 , 50 per page) page: 1 2 3 4 5 6 7 ... 328

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17238269	chr15:55639867-55639868	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs560075785	chr15:55639878-55639879	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs573525451	chr15:55639928-55639929	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs148979275	chr15:55639959-55639960	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs563131929	chr15:55640067-55640068	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs143791362	chr15:55640076-55640077	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs202019270	chr15:55640106-55640107	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs149483558	chr15:55640108-55640109	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs545609593	chr15:55640131-55640132	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs565526378	chr15:55640156-55640157	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs202017623	chr15:55640181-55640182	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs576991463	chr15:55640182-55640183	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs527765112	chr15:55640190-55640191	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs117947554	chr15:55640211-55640212	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs146629846	chr15:55640279-55640280	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs529995471	chr15:55640280-55640281	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs549771992	chr15:55640311-55640312	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs141465430	chr15:55640325-55640326	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs537794030	chr15:55640376-55640377	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs200251697	chr15:55640430-55640431	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs117127695	chr15:55640437-55640438	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs571384007	chr15:55640442-55640443	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs534004547	chr15:55640464-55640465	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs553561587	chr15:55640478-55640479	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs367861406	chr15:55640479-55640480	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs533668280	chr15:55640502-55640503	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs542606375	chr15:55640553-55640554	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
28	rs535274500	chr15:55640573-55640574	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
29	rs556236804	chr15:55640574-55640575	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
30	rs576808325	chr15:55640606-55640607	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
31	rs555513568	chr15:55640611-55640612	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
32	rs145205067	chr15:55640698-55640699	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
33	rs565463861	chr15:55640723-55640724	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
34	rs527847263	chr15:55640725-55640726	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
35	rs541615703	chr15:55640726-55640727	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
36	rs112192034	chr15:55640748-55640749	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
37	rs137895408	chr15:55640766-55640767	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
38	rs141658252	chr15:55640786-55640787	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
39	rs569742298	chr15:55640863-55640864	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
40	rs549888064	chr15:55640888-55640889	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
41	rs372185960	chr15:55640934-55640935	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
42	rs551225710	chr15:55640961-55640962	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
43	rs571543492	chr15:55640981-55640982	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
44	rs201297917	chr15:55640985-55640986	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
45	rs8024227	chr15:55640989-55640990	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs574499142	chr15:55641025-55641026	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
47	rs2439048	chr15:55641037-55641038	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs567242294	chr15:55641049-55641050	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
49	rs28368404	chr15:55641063-55641064	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs117580786	chr15:55641066-55641067	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD
Gastric adenocarcinoma	19115996	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:4357 , 50 per page) page: 1 2 3 4 5 6 7 ... 88

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55611800-55640000	Weak transcription	Gastric	stomach
2	chr15:55611800-55699400	Weak transcription	Colonic Mucosa	Colon
3	chr15:55612000-55665000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:55612000-55671000	Weak transcription	Right Ventricle	heart
5	chr15:55612000-55671000	Weak transcription	Small Intestine	intestine
6	chr15:55612600-55640400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:55612600-55650200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:55612600-55663600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:55612600-55675600	Weak transcription	Aorta	Aorta
10	chr15:55612800-55640400	Weak transcription	NHLF	lung
11	chr15:55612800-55649600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:55612800-55677600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:55614800-55649000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:55619600-55640000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:55620400-55658000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr15:55623000-55652600	Weak transcription	Psoas Muscle	Psoas
17	chr15:55623400-55642200	Weak transcription	Hela-S3	cervix
18	chr15:55623800-55660200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:55624000-55642800	Weak transcription	Esophagus	oesophagus
20	chr15:55624200-55640400	Weak transcription	Spleen	Spleen
21	chr15:55625200-55643000	Strong transcription	Primary T cells from cord blood	blood
22	chr15:55626000-55649600	Weak transcription	HUVEC	blood vessel
23	chr15:55628600-55647800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:55629800-55640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:55630000-55695000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:55630200-55649000	Weak transcription	Osteobl	bone
27	chr15:55630400-55644400	Weak transcription	A549	lung
28	chr15:55630400-55654600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:55630400-55675600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:55630600-55640400	Weak transcription	Thymus	Thymus
31	chr15:55630600-55648000	Weak transcription	HepG2	liver
32	chr15:55630600-55655800	Weak transcription	Brain Angular Gyrus	brain
33	chr15:55630600-55660200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:55630600-55663200	Weak transcription	Fetal Lung	lung
35	chr15:55630600-55667800	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:55630600-55668400	Weak transcription	Brain Substantia Nigra	brain
37	chr15:55630800-55640400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:55630800-55647000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:55630800-55652400	Weak transcription	Fetal Muscle Leg	muscle
40	chr15:55630800-55683600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:55631000-55640200	Weak transcription	Lung	lung
42	chr15:55631000-55667800	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:55631200-55640200	Weak transcription	Fetal Intestine Small	intestine
44	chr15:55631200-55644600	Weak transcription	Fetal Intestine Large	intestine
45	chr15:55631200-55646600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:55631200-55663200	Weak transcription	Pancreas	Pancrea
47	chr15:55631200-55674000	Weak transcription	Placenta	Placenta
48	chr15:55631800-55649600	Weak transcription	NH-A	brain
49	chr15:55632000-55646800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:55632200-55640400	Weak transcription	Dnd41	blood

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